Read the Docs build information
Build id: 1239480
Project: beliveau-lab-tigerfish
Version: latest
Commit: f811af7b7113106abdc6c4826b2e0aa366b263cd
Date: 2023-01-03T19:55:56.729913Z
State: cancelled
Success: False


[rtd-command-info] start-time: 2023-01-03T19:55:58.797329Z, end-time: 2023-01-03T19:56:03.104827Z, duration: 4, exit-code: 0
git clone --no-single-branch --depth 50 git@github.com:beliveau-lab/TigerFISH.git .
Cloning into '.'...
Warning: Permanently added 'github.com,192.30.255.113' (ECDSA) to the list of known hosts.

[rtd-command-info] start-time: 2023-01-03T19:56:03.303149Z, end-time: 2023-01-03T19:56:03.627714Z, duration: 0, exit-code: 0
git checkout --force origin/master
Note: switching to 'origin/master'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at f811af7 Update cli.rst

[rtd-command-info] start-time: 2023-01-03T19:56:03.874490Z, end-time: 2023-01-03T19:56:03.969297Z, duration: 0, exit-code: 0
git clean -d -f -f


[rtd-command-info] start-time: 2023-01-03T19:56:05.188847Z, end-time: 2023-01-03T19:56:09.875654Z, duration: 4, exit-code: 0
python3.7 -mvirtualenv 
Using base prefix '/home/docs/.pyenv/versions/3.7.9'
New python executable in /home/docs/checkouts/readthedocs.org/user_builds/beliveau-lab-tigerfish/envs/latest/bin/python3.7
Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/beliveau-lab-tigerfish/envs/latest/bin/python
Installing setuptools, pip, wheel...
done.

[rtd-command-info] start-time: 2023-01-03T19:56:10.073056Z, end-time: 2023-01-03T19:56:11.893333Z, duration: 1, exit-code: 0
python -m pip install --upgrade --no-cache-dir pip setuptools<58.3.0
Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/beliveau-lab-tigerfish/envs/latest/lib/python3.7/site-packages (22.3.1)
Collecting setuptools<58.3.0
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Installing collected packages: setuptools
  Attempting uninstall: setuptools
    Found existing installation: setuptools 65.6.3
    Uninstalling setuptools-65.6.3:
      Successfully uninstalled setuptools-65.6.3
Successfully installed setuptools-58.2.0

[rtd-command-info] start-time: 2023-01-03T19:56:12.120501Z, end-time: 2023-01-03T19:56:19.597240Z, duration: 7, exit-code: 0
python -m pip install --upgrade --no-cache-dir pillow mock==1.0.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.9.1 recommonmark==0.5.0 sphinx sphinx-rtd-theme readthedocs-sphinx-ext<2.3
Collecting pillow
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  Preparing metadata (setup.py): started
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Collecting alabaster!=0.7.5,<0.8,>=0.7
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Collecting readthedocs-sphinx-ext<2.3
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Collecting docutils>=0.11
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Collecting sphinxcontrib-htmlhelp>=2.0.0
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Collecting packaging>=21.0
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Collecting Pygments>=2.12
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Collecting sphinxcontrib-applehelp
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Collecting snowballstemmer>=2.0
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Collecting babel>=2.9
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Collecting Jinja2>=3.0
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Collecting imagesize>=1.3
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Collecting importlib-metadata>=4.8
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Collecting sphinxcontrib-jsmath
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Collecting docutils>=0.11
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Collecting pytz>=2015.7
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Collecting typing-extensions>=3.6.4
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Collecting MarkupSafe>=2.0
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Collecting urllib3<1.27,>=1.21.1
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Building wheels for collected packages: mock
  Building wheel for mock (setup.py): started
  Building wheel for mock (setup.py): finished with status 'done'
  Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23772 sha256=51df27efe9a96f8eb1f2f134e90f336a3ae5c5beac8789076180d9411062d464
  Stored in directory: /tmp/pip-ephem-wheel-cache-5w17c7lh/wheels/d1/33/8e/f9d24f00cc130866aacfe7c3bc15571217e2b22cc4c4e1b443
Successfully built mock
Installing collected packages: snowballstemmer, pytz, mock, commonmark, alabaster, zipp, urllib3, typing-extensions, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, Pygments, pillow, packaging, MarkupSafe, imagesize, idna, docutils, charset-normalizer, certifi, babel, requests, Jinja2, importlib-metadata, sphinx, readthedocs-sphinx-ext, sphinx-rtd-theme, recommonmark
Successfully installed Jinja2-3.1.2 MarkupSafe-2.1.1 Pygments-2.14.0 alabaster-0.7.12 babel-2.11.0 certifi-2022.12.7 charset-normalizer-2.1.1 commonmark-0.9.1 docutils-0.17.1 idna-3.4 imagesize-1.4.1 importlib-metadata-6.0.0 mock-1.0.1 packaging-22.0 pillow-9.4.0 pytz-2022.7 readthedocs-sphinx-ext-2.2.0 recommonmark-0.5.0 requests-2.28.1 snowballstemmer-2.2.0 sphinx-5.3.0 sphinx-rtd-theme-1.1.1 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-devhelp-1.0.2 sphinxcontrib-htmlhelp-2.0.0 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-1.0.3 sphinxcontrib-serializinghtml-1.1.5 typing-extensions-4.4.0 urllib3-1.26.13 zipp-3.11.0