Read the Docs build information
Build id: 121464
Project: datasciencecom-platform-users-docs
Version: master
Commit: e48e302e87b4131bb1247145cb6278b23e5d9206
Date: 2018-06-26T21:17:41.014489Z
State: finished
Success: True


[rtd-command-info] start-time: 2018-06-27T02:19:31.640903Z, end-time: 2018-06-27T02:19:39.922747Z, duration: 8, exit-code: 0
git clone --recursive git@github.com:datascienceinc/platform-docs.git .
Cloning into '.'...

[rtd-command-info] start-time: 2018-06-27T02:19:39.989737Z, end-time: 2018-06-27T02:19:40.856578Z, duration: 0, exit-code: 0
git checkout --force origin/master
Note: checking out 'origin/master'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by performing another checkout.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -b with the checkout command again. Example:

  git checkout -b <new-branch-name>

HEAD is now at e48e302... dummy

[rtd-command-info] start-time: 2018-06-27T02:19:40.913820Z, end-time: 2018-06-27T02:19:40.925710Z, duration: 0, exit-code: 0
git clean -d -f -f


[rtd-command-info] start-time: 2018-06-27T02:19:41.025207Z, end-time: 2018-06-27T02:19:41.030655Z, duration: 0, exit-code: 0
git branch -r
origin/6.1_dev
  origin/6.1_dev_elena
  origin/DSC-4231/6.1_dev/env-v2-docs
  origin/DSC-4231/env-v2-docs
  origin/HEAD -> origin/master
  origin/check_links
  origin/master
  origin/robin_image_updates
  origin/update-troubleshooting-section
  origin/version_4.2.2

[rtd-command-info] start-time: 2018-06-27T02:19:42.231113Z, end-time: 2018-06-27T02:19:44.295602Z, duration: 2, exit-code: 0
python2.7 -mvirtualenv --no-site-packages --no-download 
New python executable in /home/docs/checkouts/readthedocs.org/user_builds/datasciencecom-platform-users-docs/envs/master/bin/python2.7
Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/datasciencecom-platform-users-docs/envs/master/bin/python
Installing setuptools, pip, wheel...done.

[rtd-command-info] start-time: 2018-06-27T02:19:44.366125Z, end-time: 2018-06-27T02:20:07.272446Z, duration: 22, exit-code: 0
python pip install --use-wheel --upgrade --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/datasciencecom-platform-users-docs/.cache/pip Pygments==2.2.0 setuptools<40 docutils==0.13.1 mock==1.0.1 pillow==2.6.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.5.4 recommonmark==0.4.0 sphinx==1.7.4 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<0.6
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Collecting pyparsing>=2.0.2 (from packaging->sphinx==1.7.4)
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Building wheels for collected packages: mock, pillow, commonmark, MarkupSafe
  Running setup.py bdist_wheel for mock: started
  Running setup.py bdist_wheel for mock: finished with status 'done'
  Stored in directory: /home/docs/checkouts/readthedocs.org/user_builds/datasciencecom-platform-users-docs/.cache/pip/wheels/7e/72/92/744b532c779242b57aab4bcba80c312b30c069bbd60025e7e6
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  Running setup.py bdist_wheel for MarkupSafe: started
  Running setup.py bdist_wheel for MarkupSafe: finished with status 'done'
  Stored in directory: /home/docs/checkouts/readthedocs.org/user_builds/datasciencecom-platform-users-docs/.cache/pip/wheels/33/56/20/ebe49a5c612fffe1c5a632146b16596f9e64676768661e4e46
Successfully built mock pillow commonmark MarkupSafe
Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, commonmark, recommonmark, sphinxcontrib-websupport, six, idna, urllib3, chardet, certifi, requests, pyparsing, packaging, typing, imagesize, pytz, babel, snowballstemmer, MarkupSafe, Jinja2, sphinx, sphinx-rtd-theme, readthedocs-sphinx-ext
  Found existing installation: setuptools 28.8.0
    Uninstalling setuptools-28.8.0:
      Successfully uninstalled setuptools-28.8.0
Successfully installed Jinja2-2.10 MarkupSafe-1.0 Pygments-2.2.0 alabaster-0.7.11 babel-2.6.0 certifi-2018.4.16 chardet-3.0.4 commonmark-0.5.4 docutils-0.13.1 idna-2.7 imagesize-1.0.0 mock-1.0.1 packaging-17.1 pillow-2.6.1 pyparsing-2.2.0 pytz-2018.4 readthedocs-sphinx-ext-0.5.13 recommonmark-0.4.0 requests-2.19.1 setuptools-39.2.0 six-1.11.0 snowballstemmer-1.2.1 sphinx-1.7.4 sphinx-rtd-theme-0.4.0 sphinxcontrib-websupport-1.1.0 typing-3.6.4 urllib3-1.23
You are using pip version 9.0.1, however version 10.0.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.

[rtd-command-info] start-time: 2018-06-27T02:20:07.343780Z, end-time: 2018-06-27T02:20:29.689197Z, duration: 22, exit-code: 0
python pip install --exists-action=w --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/datasciencecom-platform-users-docs/.cache/pip -renvironment/requirements.txt
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Collecting configparser>=3.5; python_version == "2.7" (from entrypoints==0.2.3->-r environment/requirements.txt (line 11))
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Collecting backports.shutil-get-terminal-size; python_version == "2.7" (from ipython->-r environment/requirements.txt (line 14))
  Downloading https://files.pythonhosted.org/packages/7d/cd/1750d6c35fe86d35f8562091737907f234b78fdffab42b29c72b1dd861f4/backports.shutil_get_terminal_size-1.0.0-py2.py3-none-any.whl
Collecting pathlib2; python_version == "2.7" or python_version == "3.3" (from ipython->-r environment/requirements.txt (line 14))
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Collecting functools32; python_version == "2.7" (from jsonschema==2.6.0->-r environment/requirements.txt (line 18))
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Building wheels for collected packages: colorclass, pandoc, pandocfilters, ply, simplegeneric, sphinxcontrib-versioning, configparser, functools32, scandir
  Running setup.py bdist_wheel for colorclass: started
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  Stored in directory: /home/docs/checkouts/readthedocs.org/user_builds/datasciencecom-platform-users-docs/.cache/pip/wheels/d1/86/9d/16127127306a92d7fd30267890a5634026c045391979c4c317
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  Stored in directory: /home/docs/checkouts/readthedocs.org/user_builds/datasciencecom-platform-users-docs/.cache/pip/wheels/39/01/56/f1b08a6275acc59e846fa4c1e1b65dbc1919f20157d9e66c20
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  Stored in directory: /home/docs/checkouts/readthedocs.org/user_builds/datasciencecom-platform-users-docs/.cache/pip/wheels/ee/a7/25/452e4339cd14b61b79869cd34f1d2bb9b9e6c8847421cea784
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  Stored in directory: /home/docs/checkouts/readthedocs.org/user_builds/datasciencecom-platform-users-docs/.cache/pip/wheels/a9/28/53/f24776b4c5bcbe91aaf1f1e247bd6fadd17191aa12fac63902
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  Stored in directory: /home/docs/checkouts/readthedocs.org/user_builds/datasciencecom-platform-users-docs/.cache/pip/wheels/1c/f8/8d/6ca6a54489006255a14815b29abe922e7cef9320791d057572
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  Stored in directory: /home/docs/checkouts/readthedocs.org/user_builds/datasciencecom-platform-users-docs/.cache/pip/wheels/b5/18/32/77a1030457155606ba5e3ec3a8a57132b1a04b1c4f765177b2
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Successfully built colorclass pandoc pandocfilters ply simplegeneric sphinxcontrib-versioning configparser functools32 scandir
Installing collected packages: alabaster, appnope, pytz, Babel, six, webencodings, html5lib, bleach, certifi, click, colorclass, decorator, docutils, configparser, entrypoints, imagesize, scandir, pathlib2, pickleshare, simplegeneric, enum34, ipython-genutils, traitlets, backports.shutil-get-terminal-size, ptyprocess, pexpect, wcwidth, prompt-toolkit, ipython, jedi, Jinja2, functools32, jsonschema, jupyter-core, mistune, nbformat, testpath, pandocfilters, nbconvert, sphinxcontrib-websupport, requests, Sphinx, nbsphinx, ply, pandoc, sphinx-rtd-theme, sphinxcontrib-images, sphinxcontrib-versioning
  Found existing installation: alabaster 0.7.11
    Uninstalling alabaster-0.7.11:
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    Uninstalling pytz-2018.4:
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Successfully installed Babel-2.5.0 Jinja2-2.9.6 Sphinx-1.6.3 alabaster-0.7.10 appnope-0.1.0 backports.shutil-get-terminal-size-1.0.0 bleach-2.0.0 certifi-2016.2.28 click-6.7 colorclass-2.2.0 configparser-3.5.0 decorator-4.1.2 docutils-0.14 entrypoints-0.2.3 enum34-1.1.6 functools32-3.2.3.post2 html5lib-0.999999999 imagesize-0.7.1 ipython-5.7.0 ipython-genutils-0.2.0 jedi-0.10.2 jsonschema-2.6.0 jupyter-core-4.3.0 mistune-0.7.4 nbconvert-5.3.1 nbformat-4.4.0 nbsphinx-0.2.14 pandoc-1.0.0b2 pandocfilters-1.4.2 pathlib2-2.3.2 pexpect-4.2.1 pickleshare-0.7.4 ply-3.10 prompt-toolkit-1.0.15 ptyprocess-0.5.2 pytz-2017.2 requests-2.14.2 scandir-1.7 simplegeneric-0.8.1 six-1.10.0 sphinx-rtd-theme-0.2.4 sphinxcontrib-images-0.7.0 sphinxcontrib-versioning-2.2.1 sphinxcontrib-websupport-1.0.1 testpath-0.3.1 traitlets-4.3.2 wcwidth-0.1.7 webencodings-0.5.1
You are using pip version 9.0.1, however version 10.0.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.

[rtd-command-info] start-time: 2018-06-27T02:20:30.655173Z, end-time: 2018-06-27T02:20:30.732116Z, duration: 0, exit-code: 0
cat source/rst_for_sphinx/for-users/conf.py
# -*- coding: utf-8 -*-
#
# DataScience.com Platform Documentation documentation build configuration file, created by
# sphinx-quickstart on Thu Sep  7 11:14:54 2017.
#
# This file is execfile()d with the current directory set to its
# containing dir.
#
# Note that not all possible configuration values are present in this
# autogenerated file.
#
# AAll configuration values have a default; values that are commented out
# serve to show the default.

# If extensions (or modules to document with autodoc) are in another directory,
# add these directories to sys.path here. If the directory is relative to the
# documentation root, use os.path.abspath to make it absolute, like shown here.
#
# import os
# import sys
# sys.path.insert(0, os.path.abspath('.'))
import sphinx_rtd_theme

# -- General configuration ------------------------------------------------

# If your documentation needs a minimal Sphinx version, state it here.
#
# needs_sphinx = '1.0'

# Add any Sphinx extension module names here, as strings. They can be
# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
# ones.
extensions = ['sphinx.ext.autodoc',
    'sphinx.ext.imgmath',
    'sphinx.ext.viewcode',
    'nbsphinx',
    'IPython.sphinxext.ipython_console_highlighting']

# Add any paths that contain templates here, relative to this directory.
templates_path = ['_templates']

# The suffix(es) of source filenames.
# You can specify multiple suffix as a list of string:
#
# source_suffix = ['.rst', '.md']
source_suffix = '.rst'

# The master toctree document.
master_doc = 'index'

# General information about the project.
project = u'DataScience.com Platform'
copyright = u'2017, DataScience.com'
author = u'DataScience.com'

# The version info for the project you're documenting, acts as replacement for
# |version| and |release|, also used in various other places throughout the
# built documents.
#
# The short X.Y version.
version = u'4.2.1'
# The full version, including alpha/beta/rc tags.
release = u'4.2.1'

# The language for content autogenerated by Sphinx. Refer to documentation
# for a list of supported languages.
#
# This is also used if you do content translation via gettext catalogs.
# Usually you set "language" from the command line for these cases.
language = None

# List of patterns, relative to source directory, that match files and
# directories to ignore when looking for source files.
# This patterns also effect to html_static_path and html_extra_path
exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store']

# The name of the Pygments (syntax highlighting) style to use.
pygments_style = 'sphinx'

# If true, `todo` and `todoList` produce output, else they produce nothing.
todo_include_todos = False


# -- Options for HTML output ----------------------------------------------

# The theme to use for HTML and HTML Help pages.  See the documentation for
# a list of builtin themes.
#
html_theme = 'sphinx_rtd_theme'
html_theme_path = [sphinx_rtd_theme.get_html_theme_path()]

# Theme options are theme-specific and customize the look and feel of a theme
# further.  For a list of options available for each theme, see the
# documentation.
#
html_theme_options = {
 'display_version': False,
 'logo_only': True
 }

#html_logo = '_static/images/DataScienceLogo.png'
html_logo = '_static/images/DS-logo-users-docs.png'
html_show_sourcelink = False

html_favicon = '../_static/images/favicon.ico'


def setup(app):
    app.config.html_context['display_github'] = False



# Add any paths that contain custom static files (such as style sheets) here,
# relative to this directory. They are copied after the builtin static files,
# so a file named "default.css" will overwrite the builtin "default.css".
html_static_path = ['_static']

# -- Options for HTMLHelp output ------------------------------------------

# Output file base name for HTML help builder.
htmlhelp_basename = 'DataSciencecomPlatformDocumentationdoc'


# -- Options for LaTeX output ---------------------------------------------

latex_elements = {
    # The paper size ('letterpaper' or 'a4paper').
    #
    # 'papersize': 'letterpaper',

    # The font size ('10pt', '11pt' or '12pt').
    #
    # 'pointsize': '10pt',

    # Additional stuff for the LaTeX preamble.
    #
    # 'preamble': '',

    # Latex figure (float) alignment
    #
    # 'figure_align': 'htbp',
}

# Grouping the document tree into LaTeX files. List of tuples
# (source start file, target name, title,
#  author, documentclass [howto, manual, or own class]).
latex_documents = [
    (master_doc, 'DataSciencecomPlatformDocumentation.tex', u'DataScience.com Platform Documentation Documentation',
     u'DataScience.com Team', 'manual'),
]


# -- Options for manual page output ---------------------------------------

# One entry per manual page. List of tuples
# (source start file, name, description, authors, manual section).
man_pages = [
    (master_doc, 'datasciencecomplatformdocumentation', u'DataScience.com Platform Documentation Documentation',
     [author], 1)
]


# -- Options for Texinfo output -------------------------------------------

# Grouping the document tree into Texinfo files. List of tuples
# (source start file, target name, title, author,
#  dir menu entry, description, category)
texinfo_documents = [
    (master_doc, 'DataSciencecomPlatformDocumentation', u'DataScience.com Platform Documentation Documentation',
     author, 'DataSciencecomPlatformDocumentation', 'One line description of project.',
     'Miscellaneous'),
]




###########################################################################
#          auto-created readthedocs.org specific configuration            #
###########################################################################


#
# The following code was added during an automated build on readthedocs.org
# It is auto created and injected for every build. The result is based on the
# conf.py.tmpl file found in the readthedocs.org codebase:
# https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl
#


import sys
import os.path
from six import string_types

from sphinx import version_info

# Get suffix for proper linking to GitHub
# This is deprecated in Sphinx 1.3+,
# as each page can have its own suffix
if globals().get('source_suffix', False):
    if isinstance(source_suffix, string_types):
        SUFFIX = source_suffix
    else:
        SUFFIX = source_suffix[0]
else:
    SUFFIX = '.rst'

# Add RTD Static Path. Add to the end because it overwrites previous files.
if not 'html_static_path' in globals():
    html_static_path = []
if os.path.exists('_static'):
    html_static_path.append('_static')
html_static_path.append('/home/docs/checkouts/readthedocs.org/readthedocs/templates/sphinx/_static')

# Add RTD Theme only if they aren't overriding it already
using_rtd_theme = False
if 'html_theme' in globals():
    if html_theme in ['default']:
        # Allow people to bail with a hack of having an html_style
        if not 'html_style' in globals():
            import sphinx_rtd_theme
            html_theme = 'sphinx_rtd_theme'
            html_style = None
            html_theme_options = {}
            if 'html_theme_path' in globals():
                html_theme_path.append(sphinx_rtd_theme.get_html_theme_path())
            else:
                html_theme_path = [sphinx_rtd_theme.get_html_theme_path()]

            using_rtd_theme = True
else:
    import sphinx_rtd_theme
    html_theme = 'sphinx_rtd_theme'
    html_style = None
    html_theme_options = {}
    if 'html_theme_path' in globals():
        html_theme_path.append(sphinx_rtd_theme.get_html_theme_path())
    else:
        html_theme_path = [sphinx_rtd_theme.get_html_theme_path()]
    using_rtd_theme = True

if globals().get('websupport2_base_url', False):
    websupport2_base_url = 'https://readthedocs.com/websupport'
    if 'http' not in settings.MEDIA_URL:
        websupport2_static_url = 'https://media.readthedocs.com/'
    else:
        websupport2_static_url = 'https://media.readthedocs.com/media//static'


#Add project information to the template context.
context = {
    'using_theme': using_rtd_theme,
    'html_theme': html_theme,
    'current_version': "master",
    'version_slug': "master",
    'MEDIA_URL': "https://media.readthedocs.com/media/",
    'PRODUCTION_DOMAIN': "readthedocs.com",
    'versions': [
    ("latest", "/en/latest/"),
    ("6.1_dev", "/en/6.1_dev/"),
    ("version_4.2.2", "/en/version_4.2.2/"),
    ("robin_master_dev", "/en/robin_master_dev/"),
    ("robin_image_updates", "/en/robin_image_updates/"),
    ("robin_dev", "/en/robin_dev/"),
    ("robin_4.2.2_dev", "/en/robin_4.2.2_dev/"),
    ("master", "/en/master/"),
    ("dsc-4280-6.1-swarm-docs", "/en/dsc-4280-6.1-swarm-docs/"),
    ],
    'downloads': [ 
    ("pdf", "//readthedocs.com/projects/datasciencecom-platform-users-docs/downloads/pdf/master/"),
    ("htmlzip", "//readthedocs.com/projects/datasciencecom-platform-users-docs/downloads/htmlzip/master/"),
    ("epub", "//readthedocs.com/projects/datasciencecom-platform-users-docs/downloads/epub/master/"),
    ],
    'subprojects': [ 
    ],
    'slug': 'datasciencecom-platform-users-docs',
    'name': u'platform-docs',
    'rtd_language': u'en',
    'programming_language': u'words',
    'canonical_url': 'https://docs.datascience.com/en/master/',
    'analytics_code': 'UA-60130171-7',
    'single_version': False,
    'conf_py_path': '/source/rst_for_sphinx/for-users/',
    'api_host': 'https://readthedocs.com',
    'github_user': 'datascienceinc',
    'github_repo': 'platform-docs',
    'github_version': 'master',
    'display_github': True,
    'bitbucket_user': 'None',
    'bitbucket_repo': 'None',
    'bitbucket_version': 'master',
    'display_bitbucket': False,
    'gitlab_user': 'None',
    'gitlab_repo': 'None',
    'gitlab_version': 'master',
    'display_gitlab': False,
    'READTHEDOCS': True,
    'using_theme': (html_theme == "default"),
    'new_theme': (html_theme == "sphinx_rtd_theme"),
    'source_suffix': SUFFIX,
    'user_analytics_code': 'UA-60130171-7',
    'global_analytics_code': 'UA-17997319-2',
    
    'commit': 'e48e302e',
    
}




if 'html_context' in globals():
    html_context.update(context)
else:
    html_context = context

# Add custom RTD extension
if 'extensions' in globals():
    # Insert at the beginning because it can interfere
    # with other extensions.
    # See https://github.com/rtfd/readthedocs.org/pull/4054
    extensions.insert(0, "readthedocs_ext.readthedocs")
else:
    extensions = ["readthedocs_ext.readthedocs"]

# Build the json artifacts with the html build step
rtd_generate_json_artifacts = False

[rtd-command-info] start-time: 2018-06-27T02:20:30.796582Z, end-time: 2018-06-27T02:20:37.129259Z, duration: 6, exit-code: 0
python sphinx-build -T -E -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html
Running Sphinx v1.6.3
making output directory...
loading translations [en]... done
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updating environment: 50 added, 0 changed, 0 removed
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/home/docs/checkouts/readthedocs.org/user_builds/datasciencecom-platform-users-docs/checkouts/master/source/rst_for_sphinx/for-users/index.rst:45: WARNING: toctree contains reference to nonexisting document u'..   :titlesonly:'
/home/docs/checkouts/readthedocs.org/user_builds/datasciencecom-platform-users-docs/checkouts/master/source/rst_for_sphinx/for-users/release-notes.rst:264: WARNING: Unexpected indentation.
WARNING: /home/docs/checkouts/readthedocs.org/user_builds/datasciencecom-platform-users-docs/checkouts/master/source/rst_for_sphinx/for-users/tutorials-and-examples/building-rshiny-app.rst:140: (ERROR/3) Error in "code-block" directive:
1 argument(s) required, 0 supplied.

.. code-block::

    # Define server logic required to draw a histogram
  server <- function(input, output) {

    # Filter for data you want
    hour_pickups = reactive({
      geo_pickups %>%
        filter(hour == input$hour) %>%
        select(locationID, mean_pickup)
    })

    # Create interactive map
    heatmap = reactive({
      right_join(zone_polys, hour_pickups(), by = c("id" = "locationID"))
    })

    output$NYC_heatmap = renderPlot({
      ggplot() +
        geom_polygon(data = heatmap()
                     , aes(x = long, y = lat, group = id, fill = mean_pickup)
                     , color = "black"
                     , size = 0.25) +
        scale_fill_continuous(cont_gradient
                              , name = "Mean pickups by hour"
                              , breaks = pretty_breaks (n = 7)
                              , limits = c(0, 120)) +
        guides(fill = guide_legend(reverse = TRUE)) +
        xlim(-74.05, -73.8) +
        ylim(40.6, 40.85) +
        coord_map() +
        labs(x = "Latitude"
             , y = "Longitude"
             , title = paste0("Pickups By Zone at "
                              , input$hour)
        )
    })

    # Check which polygon the mouse is hovering over
    output$tooltip = renderPrint({
      paste0("Longitude: "
             , as.character(round(as.numeric(input$plot_hover$x), digits = 4))
             , "; "
             , "Latitude: "
             , as.character(round(as.numeric(input$plot_hover$y), digits = 4))
      )
    })
  }
/home/docs/checkouts/readthedocs.org/user_builds/datasciencecom-platform-users-docs/checkouts/master/source/rst_for_sphinx/for-users/tutorials-and-examples/examples.rst:17: WARNING: Explicit markup ends without a blank line; unexpected unindent.
/home/docs/checkouts/readthedocs.org/user_builds/datasciencecom-platform-users-docs/checkouts/master/source/rst_for_sphinx/for-users/tutorials-and-examples/examples.rst:21: WARNING: Explicit markup ends without a blank line; unexpected unindent.
/home/docs/checkouts/readthedocs.org/user_builds/datasciencecom-platform-users-docs/checkouts/master/source/rst_for_sphinx/for-users/tutorials-and-examples/examples.rst:25: WARNING: Explicit markup ends without a blank line; unexpected unindent.
/home/docs/checkouts/readthedocs.org/user_builds/datasciencecom-platform-users-docs/checkouts/master/source/rst_for_sphinx/for-users/tutorials-and-examples/examples.rst:29: WARNING: Explicit markup ends without a blank line; unexpected unindent.
looking for now-outdated files... none found
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checking consistency... /home/docs/checkouts/readthedocs.org/user_builds/datasciencecom-platform-users-docs/checkouts/master/source/rst_for_sphinx/for-users/connect-to-data-sources/microsoft-sql.rst: WARNING: document isn't included in any toctree
/home/docs/checkouts/readthedocs.org/user_builds/datasciencecom-platform-users-docs/checkouts/master/source/rst_for_sphinx/for-users/version-control-1/best-practices-version-control.rst: WARNING: document isn't included in any toctree
done
preparing documents... done
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/home/docs/checkouts/readthedocs.org/user_builds/datasciencecom-platform-users-docs/checkouts/master/source/rst_for_sphinx/for-users/appendix-1/git-provider-integration-1.rst:142: WARNING: Could not lex literal_block as "sql". Highlighting skipped.
/home/docs/checkouts/readthedocs.org/user_builds/datasciencecom-platform-users-docs/checkouts/master/source/rst_for_sphinx/for-users/r-shiny-dashboards.rst:23: WARNING: undefined label: r-shiny-dashboards_7#running-a-directory (if the link has no caption the label must precede a section header)
/home/docs/checkouts/readthedocs.org/user_builds/datasciencecom-platform-users-docs/checkouts/master/source/rst_for_sphinx/for-users/reports.rst:95: WARNING: Pygments lexer name u'markdown' is not known
generating indices... genindex
/home/docs/checkouts/readthedocs.org/user_builds/datasciencecom-platform-users-docs/envs/master/local/lib/python2.7/site-packages/sphinx/application.py:445: RemovedInSphinx17Warning: app.status_iterator() is now deprecated. Use sphinx.util.status_iterator() instead.
  RemovedInSphinx17Warning)
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build succeeded, 13 warnings.

[rtd-command-info] start-time: 2018-06-27T02:20:38.164509Z, end-time: 2018-06-27T02:20:42.798554Z, duration: 4, exit-code: 0
python sphinx-build -T -b json -d _build/doctrees-json -D language=en . _build/json
Running Sphinx v1.6.3
making output directory...
loading translations [en]... done
loading pickled environment... not yet created
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1 argument(s) required, 0 supplied.

.. code-block::

    # Define server logic required to draw a histogram
  server <- function(input, output) {

    # Filter for data you want
    hour_pickups = reactive({
      geo_pickups %>%
        filter(hour == input$hour) %>%
        select(locationID, mean_pickup)
    })

    # Create interactive map
    heatmap = reactive({
      right_join(zone_polys, hour_pickups(), by = c("id" = "locationID"))
    })

    output$NYC_heatmap = renderPlot({
      ggplot() +
        geom_polygon(data = heatmap()
                     , aes(x = long, y = lat, group = id, fill = mean_pickup)
                     , color = "black"
                     , size = 0.25) +
        scale_fill_continuous(cont_gradient
                              , name = "Mean pickups by hour"
                              , breaks = pretty_breaks (n = 7)
                              , limits = c(0, 120)) +
        guides(fill = guide_legend(reverse = TRUE)) +
        xlim(-74.05, -73.8) +
        ylim(40.6, 40.85) +
        coord_map() +
        labs(x = "Latitude"
             , y = "Longitude"
             , title = paste0("Pickups By Zone at "
                              , input$hour)
        )
    })

    # Check which polygon the mouse is hovering over
    output$tooltip = renderPrint({
      paste0("Longitude: "
             , as.character(round(as.numeric(input$plot_hover$x), digits = 4))
             , "; "
             , "Latitude: "
             , as.character(round(as.numeric(input$plot_hover$y), digits = 4))
      )
    })
  }
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[rtd-command-info] start-time: 2018-06-27T02:20:43.404993Z, end-time: 2018-06-27T02:20:48.055765Z, duration: 4, exit-code: 0
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.. code-block::

    # Define server logic required to draw a histogram
  server <- function(input, output) {

    # Filter for data you want
    hour_pickups = reactive({
      geo_pickups %>%
        filter(hour == input$hour) %>%
        select(locationID, mean_pickup)
    })

    # Create interactive map
    heatmap = reactive({
      right_join(zone_polys, hour_pickups(), by = c("id" = "locationID"))
    })

    output$NYC_heatmap = renderPlot({
      ggplot() +
        geom_polygon(data = heatmap()
                     , aes(x = long, y = lat, group = id, fill = mean_pickup)
                     , color = "black"
                     , size = 0.25) +
        scale_fill_continuous(cont_gradient
                              , name = "Mean pickups by hour"
                              , breaks = pretty_breaks (n = 7)
                              , limits = c(0, 120)) +
        guides(fill = guide_legend(reverse = TRUE)) +
        xlim(-74.05, -73.8) +
        ylim(40.6, 40.85) +
        coord_map() +
        labs(x = "Latitude"
             , y = "Longitude"
             , title = paste0("Pickups By Zone at "
                              , input$hour)
        )
    })

    # Check which polygon the mouse is hovering over
    output$tooltip = renderPrint({
      paste0("Longitude: "
             , as.character(round(as.numeric(input$plot_hover$x), digits = 4))
             , "; "
             , "Latitude: "
             , as.character(round(as.numeric(input$plot_hover$y), digits = 4))
      )
    })
  }
/home/docs/checkouts/readthedocs.org/user_builds/datasciencecom-platform-users-docs/checkouts/master/source/rst_for_sphinx/for-users/tutorials-and-examples/examples.rst:17: WARNING: Explicit markup ends without a blank line; unexpected unindent.
/home/docs/checkouts/readthedocs.org/user_builds/datasciencecom-platform-users-docs/checkouts/master/source/rst_for_sphinx/for-users/tutorials-and-examples/examples.rst:21: WARNING: Explicit markup ends without a blank line; unexpected unindent.
/home/docs/checkouts/readthedocs.org/user_builds/datasciencecom-platform-users-docs/checkouts/master/source/rst_for_sphinx/for-users/tutorials-and-examples/examples.rst:25: WARNING: Explicit markup ends without a blank line; unexpected unindent.
/home/docs/checkouts/readthedocs.org/user_builds/datasciencecom-platform-users-docs/checkouts/master/source/rst_for_sphinx/for-users/tutorials-and-examples/examples.rst:29: WARNING: Explicit markup ends without a blank line; unexpected unindent.
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/home/docs/checkouts/readthedocs.org/user_builds/datasciencecom-platform-users-docs/checkouts/master/source/rst_for_sphinx/for-users/version-control-1/best-practices-version-control.rst: WARNING: document isn't included in any toctree
done
preparing documents... done
assembling single document... account-setup account-setup/git-configuration account-setup/kerberos-authentication-1 account-setup/mapr-authentication account-setup/collaborators-and-access-control account-setup/environment-variables account-setup/platform-configuration version-control version-control-1/overview-version-control projects projects/create-a-project projects/navigation projects/project-collaborators projects/environment-variables projects/best-practices-migrating-existing-work environments-1 environments-1/environments-and-dependencies environments-1/environment-management-1 environments-1/compute-resources environments-1/using-spark-on-the-platform environments-1/best-practices-choosing-the-right-container-size environments-1/best-practices-using-dependency-files interactive-sessions connect-to-data-sources connect-to-data-sources/aws-redshift connect-to-data-sources/aws-s3 connect-to-data-sources/mysql connect-to-data-sources/bigquery connect-to-data-sources/sap-hana runs-and-scheduled-runs reports r-shiny-dashboards model-apis deploy-apis-1/deploy-overview deploy-apis-1/best-practices-deploying-models-on-the-datasciencecom-platform appendix-1 appendix-1/dockerfile-basics-and-best-practices-1 appendix-1/enabling-hadoop-and-spark-1 appendix-1/git-provider-integration-1 release-notes tutorials-and-examples tutorials-and-examples/learning-modules tutorials-and-examples/examples tutorials-and-examples/building-rshiny-app tutorials-and-examples/using-deployed-api-1 tutorials-and-examples/deployed-apis-use-case-example-in-python-network-intrusions tutorials-and-examples/deploying-a-python-xgboost-model /home/docs/checkouts/readthedocs.org/user_builds/datasciencecom-platform-users-docs/checkouts/master/source/rst_for_sphinx/for-users/r-shiny-dashboards.rst:23: WARNING: undefined label: r-shiny-dashboards_7#running-a-directory (if the link has no caption the label must precede a section header)

writing... /home/docs/checkouts/readthedocs.org/user_builds/datasciencecom-platform-users-docs/checkouts/master/source/rst_for_sphinx/for-users/index.rst:95: WARNING: Pygments lexer name u'markdown' is not known
/home/docs/checkouts/readthedocs.org/user_builds/datasciencecom-platform-users-docs/checkouts/master/source/rst_for_sphinx/for-users/index.rst:142: WARNING: Could not lex literal_block as "sql". Highlighting skipped.
done
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build succeeded, 13 warnings.

[rtd-command-info] start-time: 2018-06-27T02:20:50.428583Z, end-time: 2018-06-27T02:20:55.348984Z, duration: 4, exit-code: 0
python sphinx-build -b latex -D language=en -d _build/doctrees . _build/latex
Running Sphinx v1.6.3
making output directory...
loading translations [en]... done
loading pickled environment... not yet created
building [mo]: targets for 0 po files that are out of date
building [latex]: all documents
updating environment: 50 added, 0 changed, 0 removed
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/home/docs/checkouts/readthedocs.org/user_builds/datasciencecom-platform-users-docs/checkouts/master/source/rst_for_sphinx/for-users/index.rst:45: WARNING: toctree contains reference to nonexisting document u'..   :titlesonly:'
/home/docs/checkouts/readthedocs.org/user_builds/datasciencecom-platform-users-docs/checkouts/master/source/rst_for_sphinx/for-users/release-notes.rst:264: WARNING: Unexpected indentation.
WARNING: /home/docs/checkouts/readthedocs.org/user_builds/datasciencecom-platform-users-docs/checkouts/master/source/rst_for_sphinx/for-users/tutorials-and-examples/building-rshiny-app.rst:140: (ERROR/3) Error in "code-block" directive:
1 argument(s) required, 0 supplied.

.. code-block::

    # Define server logic required to draw a histogram
  server <- function(input, output) {

    # Filter for data you want
    hour_pickups = reactive({
      geo_pickups %>%
        filter(hour == input$hour) %>%
        select(locationID, mean_pickup)
    })

    # Create interactive map
    heatmap = reactive({
      right_join(zone_polys, hour_pickups(), by = c("id" = "locationID"))
    })

    output$NYC_heatmap = renderPlot({
      ggplot() +
        geom_polygon(data = heatmap()
                     , aes(x = long, y = lat, group = id, fill = mean_pickup)
                     , color = "black"
                     , size = 0.25) +
        scale_fill_continuous(cont_gradient
                              , name = "Mean pickups by hour"
                              , breaks = pretty_breaks (n = 7)
                              , limits = c(0, 120)) +
        guides(fill = guide_legend(reverse = TRUE)) +
        xlim(-74.05, -73.8) +
        ylim(40.6, 40.85) +
        coord_map() +
        labs(x = "Latitude"
             , y = "Longitude"
             , title = paste0("Pickups By Zone at "
                              , input$hour)
        )
    })

    # Check which polygon the mouse is hovering over
    output$tooltip = renderPrint({
      paste0("Longitude: "
             , as.character(round(as.numeric(input$plot_hover$x), digits = 4))
             , "; "
             , "Latitude: "
             , as.character(round(as.numeric(input$plot_hover$y), digits = 4))
      )
    })
  }
/home/docs/checkouts/readthedocs.org/user_builds/datasciencecom-platform-users-docs/checkouts/master/source/rst_for_sphinx/for-users/tutorials-and-examples/examples.rst:17: WARNING: Explicit markup ends without a blank line; unexpected unindent.
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/home/docs/checkouts/readthedocs.org/user_builds/datasciencecom-platform-users-docs/checkouts/master/source/rst_for_sphinx/for-users/tutorials-and-examples/examples.rst:25: WARNING: Explicit markup ends without a blank line; unexpected unindent.
/home/docs/checkouts/readthedocs.org/user_builds/datasciencecom-platform-users-docs/checkouts/master/source/rst_for_sphinx/for-users/tutorials-and-examples/examples.rst:29: WARNING: Explicit markup ends without a blank line; unexpected unindent.
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/home/docs/checkouts/readthedocs.org/user_builds/datasciencecom-platform-users-docs/checkouts/master/source/rst_for_sphinx/for-users/version-control-1/best-practices-version-control.rst: WARNING: document isn't included in any toctree
done
processing DataSciencecomPlatformDocumentation.tex...index account-setup account-setup/git-configuration account-setup/kerberos-authentication-1 account-setup/mapr-authentication account-setup/collaborators-and-access-control account-setup/environment-variables account-setup/platform-configuration version-control version-control-1/overview-version-control projects projects/create-a-project projects/navigation projects/project-collaborators projects/environment-variables projects/best-practices-migrating-existing-work environments-1 environments-1/environments-and-dependencies environments-1/environment-management-1 environments-1/compute-resources environments-1/using-spark-on-the-platform environments-1/best-practices-choosing-the-right-container-size environments-1/best-practices-using-dependency-files interactive-sessions connect-to-data-sources connect-to-data-sources/aws-redshift connect-to-data-sources/aws-s3 connect-to-data-sources/mysql connect-to-data-sources/bigquery connect-to-data-sources/sap-hana runs-and-scheduled-runs reports r-shiny-dashboards model-apis deploy-apis-1/deploy-overview deploy-apis-1/best-practices-deploying-models-on-the-datasciencecom-platform appendix-1 appendix-1/dockerfile-basics-and-best-practices-1 appendix-1/enabling-hadoop-and-spark-1 appendix-1/git-provider-integration-1 release-notes tutorials-and-examples tutorials-and-examples/learning-modules tutorials-and-examples/examples tutorials-and-examples/building-rshiny-app tutorials-and-examples/using-deployed-api-1 tutorials-and-examples/deployed-apis-use-case-example-in-python-network-intrusions tutorials-and-examples/deploying-a-python-xgboost-model 
resolving references...
/home/docs/checkouts/readthedocs.org/user_builds/datasciencecom-platform-users-docs/checkouts/master/source/rst_for_sphinx/for-users/r-shiny-dashboards.rst:23: WARNING: undefined label: r-shiny-dashboards_7#running-a-directory (if the link has no caption the label must precede a section header)
writing... WARNING: too large :maxdepth:, ignored.
/home/docs/checkouts/readthedocs.org/user_builds/datasciencecom-platform-users-docs/checkouts/master/source/rst_for_sphinx/for-users/reports.rst:95: WARNING: Pygments lexer name u'markdown' is not known
/home/docs/checkouts/readthedocs.org/user_builds/datasciencecom-platform-users-docs/checkouts/master/source/rst_for_sphinx/for-users/appendix-1/git-provider-integration-1.rst:142: WARNING: Could not lex literal_block as "sql". Highlighting skipped.
done
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Chapter 15.
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Chapter 1.
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<use users-git-integration2.png>
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<use github-oauth-1.png> [4 <./users-git-integration1.png>] [5 <./users-git-int
egration2.png> <./github-oauth-1.png>]
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<use bitbucket-oauth-1.png>
<gitlab-auth-1.png, id=1705, 2437.105pt x 1403.2425pt> <use gitlab-auth-1.png>
[6 <./bitbucket-oauth-1.png>] [7 <./gitlab-auth-1.png>]
<users-team-1.png, id=1716, 1150.2975pt x 743.77875pt> <use users-team-1.png>
[8 <./users-team-1.png>] <use users-team-1.png>
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[14] [15] [16]
Chapter 2.
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<use users-version-control-1.png> [17]
<Sync-changes-menu1.png, id=1770, 1280.785pt x 676.5275pt>
<use Sync-changes-menu1.png> [18 <./users-version-control-1.png>] [19 <./Sync-c
hanges-menu1.png>] [20]
Chapter 3.
<Create-a-project.png, id=1788, 1282.7925pt x 677.53125pt>
<use Create-a-project.png> <Navigation.png, id=1789, 1281.78876pt x 678.535pt>
<use Navigation.png> [21] [22 <./Create-a-project.png>]
<Project-environment-variables.png, id=1808, 1281.78876pt x 669.50125pt>
<use Project-environment-variables.png> [23 <./Navigation.png>]
<Git-credentials.png, id=1815, 1280.785pt x 677.53125pt>
<use Git-credentials.png> <Git-repo.png, id=1816, 1279.78125pt x 677.53125pt>
<use Git-repo.png>
<Jupyter-session-upload.png, id=1817, 1282.7925pt x 441.65pt>
<use Jupyter-session-upload.png> [24 <./Project-environment-variables.png>]
[25 <./Git-credentials.png> <./Git-repo.png>] [26 <./Jupyter-session-upload.png
>]
Chapter 4.

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06_at_2.28.00_PM.png> <./Screen_Shot_2017-12-06_at_2.51.21_PM.png> <./Screen_Sh
ot_2017-12-06_at_2.53.31_PM.png>]
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 [50]
Chapter 5.
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<use Launch-a-session.png>
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<use Active-sessions.png> [52 <./Launch-a-session.png>]
<Sync-changes.png, id=2034, 1280.785pt x 677.53125pt> <use Sync-changes.png>
<Sync-changes-menu.png, id=2035, 1280.785pt x 676.5275pt>
<use Sync-changes-menu.png> [53 <./Active-sessions.png>] [54 <./Sync-changes.pn
g> <./Sync-changes-menu.png>]
<Shutdown.png, id=2047, 1280.785pt x 677.53125pt> <use Shutdown.png> [55 <./Shu
tdown.png>] [56]
Chapter 6.
[57] [58] [59]
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Chapter 7.
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<Activity-feed.png, id=2127, 1279.78125pt x 362.35374pt>
<use Activity-feed.png>
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<./Run-details-page.png>]
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<use Schedule-a-run-basic.png> [75 <./Schedule-a-run-basic.png>]
<Schedule-details.png, id=2149, 1275.76625pt x 677.53125pt>
<use Schedule-details.png> [76 <./Schedule-details.png>]
Chapter 8.
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<run-and-publish-1.png, id=2156, 1442.38875pt x 808.01875pt>
<use run-and-publish-1.png>
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<use run-and-publish-2.png> [77] [78 <./publish-1.png> <./run-and-publish-1.png
>] [79 <./run-and-publish-2.png>]
<view-report-1.png, id=2174, 1437.37pt x 805.0075pt> <use view-report-1.png>
<new-version-1.png, id=2175, 1440.38126pt x 799.98875pt>
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Chapter 9.
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[85] <Publish-a-new-shiny-version.png, id=2211, 1283.79625pt x 677.53125pt>
<use Publish-a-new-shiny-version.png>
<shiny-view.png, id=2212, 1893.0725pt x 980.66376pt> <use shiny-view.png>
[86 <./shiny-publish.png> <./Publish-a-new-shiny-version.png>]
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<use shiny-delete-all.png> [87 <./shiny-view.png>] [88 <./shiny-delete-all.png>
]
Chapter 10.
[89] <Deploy-an-API-basic.png, id=2235, 1277.77374pt x 810.02625pt>
<use Deploy-an-API-basic.png> [90 <./Deploy-an-API-basic.png>]
<API-details.png, id=2241, 1278.7775pt x 892.33376pt> <use API-details.png>
<Delete-an-API-option.png, id=2242, 1275.76625pt x 677.53125pt>
<use Delete-an-API-option.png> [91 <./API-details.png>] [92 <./Delete-an-API-op
tion.png>] [93] <use API-details.png> [94] [95] [96] [97] [98] [99] [100]
Chapter 11.
[101] [102] [103] [104]
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[107]
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Chapter 12.
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Chapter 13.
[121] [122] [123]
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Chapter 14.
[143] [144]
Chapter 15.
(./DataSciencecomPlatformDocumentation.ind) [145]
(./DataSciencecomPlatformDocumentation.aux) )
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Output written on DataSciencecomPlatformDocumentation.pdf (155 pages, 22110243 
bytes).
Transcript written on DataSciencecomPlatformDocumentation.log.

[rtd-command-info] start-time: 2018-06-27T02:21:43.340241Z, end-time: 2018-06-27T02:21:43.415075Z, duration: 0, exit-code: 0
mv -f /home/docs/checkouts/readthedocs.org/user_builds/datasciencecom-platform-users-docs/checkouts/master/source/rst_for_sphinx/for-users/_build/latex/DataSciencecomPlatformDocumentation.pdf /home/docs/checkouts/readthedocs.org/user_builds/datasciencecom-platform-users-docs/artifacts/master/sphinx_pdf/datasciencecom-platform-users-docs.pdf


[rtd-command-info] start-time: 2018-06-27T02:21:43.474703Z, end-time: 2018-06-27T02:21:51.342907Z, duration: 7, exit-code: 0
python sphinx-build -T -b epub -d _build/doctrees-epub -D language=en . _build/epub
Running Sphinx v1.6.3
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1 argument(s) required, 0 supplied.

.. code-block::

    # Define server logic required to draw a histogram
  server <- function(input, output) {

    # Filter for data you want
    hour_pickups = reactive({
      geo_pickups %>%
        filter(hour == input$hour) %>%
        select(locationID, mean_pickup)
    })

    # Create interactive map
    heatmap = reactive({
      right_join(zone_polys, hour_pickups(), by = c("id" = "locationID"))
    })

    output$NYC_heatmap = renderPlot({
      ggplot() +
        geom_polygon(data = heatmap()
                     , aes(x = long, y = lat, group = id, fill = mean_pickup)
                     , color = "black"
                     , size = 0.25) +
        scale_fill_continuous(cont_gradient
                              , name = "Mean pickups by hour"
                              , breaks = pretty_breaks (n = 7)
                              , limits = c(0, 120)) +
        guides(fill = guide_legend(reverse = TRUE)) +
        xlim(-74.05, -73.8) +
        ylim(40.6, 40.85) +
        coord_map() +
        labs(x = "Latitude"
             , y = "Longitude"
             , title = paste0("Pickups By Zone at "
                              , input$hour)
        )
    })

    # Check which polygon the mouse is hovering over
    output$tooltip = renderPrint({
      paste0("Longitude: "
             , as.character(round(as.numeric(input$plot_hover$x), digits = 4))
             , "; "
             , "Latitude: "
             , as.character(round(as.numeric(input$plot_hover$y), digits = 4))
      )
    })
  }
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done
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writing nav.xhtml file...
writing toc.ncx file...
writing DataSciencecomPlatform.epub file...
build succeeded, 212 warnings.

[rtd-command-info] start-time: 2018-06-27T02:21:51.439713Z, end-time: 2018-06-27T02:21:51.516299Z, duration: 0, exit-code: 0
mv -f /home/docs/checkouts/readthedocs.org/user_builds/datasciencecom-platform-users-docs/checkouts/master/source/rst_for_sphinx/for-users/_build/epub/DataSciencecomPlatform.epub /home/docs/checkouts/readthedocs.org/user_builds/datasciencecom-platform-users-docs/artifacts/master/sphinx_epub/datasciencecom-platform-users-docs.epub