Read the Docs build information Build id: 1070878 Project: mdolab-idwarp Version: latest Commit: 5d1406322270e6ed87bcfd9792aa89998d5a23d8 Date: 2022-08-26T17:36:31.944811Z State: finished Success: True [rtd-command-info] start-time: 2022-08-26T17:36:44.613044Z, end-time: 2022-08-26T17:36:48.961156Z, duration: 4, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/mdolab/idwarp.git . Cloning into '.'... [rtd-command-info] start-time: 2022-08-26T17:36:49.166770Z, end-time: 2022-08-26T17:36:49.313269Z, duration: 0, exit-code: 0 git checkout --force origin/main Note: switching to 'origin/main'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 5d14063 Git blame ignore for fprettify (#73) [rtd-command-info] start-time: 2022-08-26T17:36:49.533331Z, end-time: 2022-08-26T17:36:49.595930Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2022-08-26T17:36:50.572793Z, end-time: 2022-08-26T17:36:55.061617Z, duration: 4, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.9' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/envs/latest/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/envs/latest/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2022-08-26T17:36:55.250201Z, end-time: 2022-08-26T17:36:56.977775Z, duration: 1, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip setuptools<58.3.0 Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/envs/latest/lib/python3.7/site-packages (22.2.2) Collecting setuptools<58.3.0 Downloading setuptools-58.2.0-py3-none-any.whl (946 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 946.1/946.1 kB 35.3 MB/s eta 0:00:00 Installing collected packages: setuptools Attempting uninstall: setuptools Found existing installation: setuptools 65.3.0 Uninstalling setuptools-65.3.0: Successfully uninstalled setuptools-65.3.0 Successfully installed setuptools-58.2.0 [rtd-command-info] start-time: 2022-08-26T17:36:57.176615Z, end-time: 2022-08-26T17:37:04.997619Z, duration: 7, exit-code: 0 python -m pip install --upgrade --no-cache-dir pillow mock==1.0.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 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Installing collected packages: appdirs, zipp, typing-extensions, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, rply, pyyaml, numpy, latexcodec, pybtex, importlib-metadata, baron, sphinx, redbaron, pybtex-docutils, sphinxcontrib-bibtex, sphinxcontrib-autoprogram, sphinx-tabs, sphinx-rtd-theme, sphinx-prompt, sphinx-copybutton, numpydoc, sphinx_mdolab_theme Attempting uninstall: sphinx Found existing installation: Sphinx 1.8.6 Uninstalling Sphinx-1.8.6: Successfully uninstalled Sphinx-1.8.6 Attempting uninstall: sphinx-rtd-theme Found existing installation: sphinx-rtd-theme 0.4.3 Uninstalling sphinx-rtd-theme-0.4.3: Successfully uninstalled sphinx-rtd-theme-0.4.3 Successfully installed appdirs-1.4.4 baron-0.10.1 importlib-metadata-4.12.0 latexcodec-2.0.1 numpy-1.21.6 numpydoc-1.4.0 pybtex-0.24.0 pybtex-docutils-1.0.2 pyyaml-6.0 redbaron-0.9.2 rply-0.7.8 sphinx-5.1.1 sphinx-copybutton-0.5.0 sphinx-prompt-1.5.0 sphinx-rtd-theme-1.0.0 sphinx-tabs-3.4.0 sphinx_mdolab_theme-1.4.2 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-autoprogram-0.1.7 sphinxcontrib-bibtex-2.5.0 sphinxcontrib-devhelp-1.0.2 sphinxcontrib-htmlhelp-2.0.0 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-1.0.3 typing-extensions-4.3.0 zipp-3.8.1 [rtd-command-info] start-time: 2022-08-26T17:37:13.636738Z, end-time: 2022-08-26T17:37:13.723452Z, duration: 0, exit-code: 0 cat doc/conf.py from sphinx_mdolab_theme.config import * # noqa: F403 # -- Path setup -------------------------------------------------------------- # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # documentation root, use os.path.abspath to make it absolute, like shown here. import os import sys sys.path.insert(0, os.path.abspath("../")) # -- Project information ----------------------------------------------------- project = "IDWarp" # -- General configuration ----------------------------------------------------- # Built-in Sphinx extensions are already contained in the imported variable # here we add external extensions, which must also be added to requirements.txt # so that RTD can import and use them extensions.extend(["numpydoc"]) # noqa: F405 # mock import for autodoc autodoc_mock_imports = ["numpy", "mpi4py", "petsc4py", "baseclasses"] # Specify the baseurls for the projects I want to link to intersphinx_mapping = { "mach-aero": ("https://mdolab-mach-aero.readthedocs-hosted.com/en/latest", None), } ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/main/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # # Note: this file shouldn't rely on extra dependencies. import importlib import sys import os.path # Borrowed from six. PY3 = sys.version_info[0] == 3 string_types = str if PY3 else basestring from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix elif isinstance(source_suffix, (list, tuple)): # Sphinx >= 1.3 supports list/tuple to define multiple suffixes SUFFIX = source_suffix[0] elif isinstance(source_suffix, dict): # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility else: # default to .rst SUFFIX = '.rst' else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = ( ( 'html_theme' in globals() and html_theme in ['default'] and # Allow people to bail with a hack of having an html_style 'html_style' not in globals() ) or 'html_theme' not in globals() ) if using_rtd_theme: theme = importlib.import_module('sphinx_rtd_theme') html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(theme.get_html_theme_path()) else: html_theme_path = [theme.get_html_theme_path()] if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.com/websupport' websupport2_static_url = 'https://assets.readthedocs.com/' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "latest", 'version_slug': "latest", 'MEDIA_URL': "https://media.readthedocs.com/media/", 'STATIC_URL': "https://assets.readthedocs.com/", 'PRODUCTION_DOMAIN': "readthedocs.com", 'proxied_static_path': "/_/static/", 'versions': [ ("latest", "/en/latest/"), ("stable", "/en/stable/"), ], 'downloads': [ ("pdf", "//mdolab-idwarp.readthedocs-hosted.com/_/downloads/en/latest/pdf/"), ("html", "//mdolab-idwarp.readthedocs-hosted.com/_/downloads/en/latest/htmlzip/"), ("epub", "//mdolab-idwarp.readthedocs-hosted.com/_/downloads/en/latest/epub/"), ], 'subprojects': [ ], 'slug': 'mdolab-idwarp', 'name': u'idwarp', 'rtd_language': u'en', 'programming_language': u'words', 'canonical_url': 'https://mdolab-idwarp.readthedocs-hosted.com/en/latest/', 'analytics_code': 'None', 'single_version': False, 'conf_py_path': '/doc/', 'api_host': 'https://readthedocs.com', 'github_user': 'mdolab', 'proxied_api_host': '/_', 'github_repo': 'idwarp', 'github_version': 'main', 'display_github': True, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'main', 'display_bitbucket': False, 'gitlab_user': 'None', 'gitlab_repo': 'None', 'gitlab_version': 'main', 'display_gitlab': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'ad_free': False, 'docsearch_disabled': False, 'user_analytics_code': '', 'global_analytics_code': 'UA-17997319-2', 'commit': '5d140632', } # For sphinx >=1.8 we can use html_baseurl to set the canonical URL. # https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-html_baseurl if version_info >= (1, 8): if not globals().get('html_baseurl'): html_baseurl = context['canonical_url'] context['canonical_url'] = None if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): # Insert at the beginning because it can interfere # with other extensions. # See https://github.com/rtfd/readthedocs.org/pull/4054 extensions.insert(0, "readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] # Add External version warning banner to the external version documentation if 'branch' == 'external': extensions.insert(1, "readthedocs_ext.external_version_warning") readthedocs_vcs_url = 'None' readthedocs_build_url = 'https://readthedocs.com/projects/mdolab-idwarp/builds/1070878/' project_language = 'en' # User's Sphinx configurations language_user = globals().get('language', None) latex_engine_user = globals().get('latex_engine', None) latex_elements_user = globals().get('latex_elements', None) # Remove this once xindy gets installed in Docker image and XINDYOPS # env variable is supported # https://github.com/rtfd/readthedocs-docker-images/pull/98 latex_use_xindy = False chinese = any([ language_user in ('zh_CN', 'zh_TW'), project_language in ('zh_CN', 'zh_TW'), ]) japanese = any([ language_user == 'ja', project_language == 'ja', ]) if chinese: latex_engine = latex_engine_user or 'xelatex' latex_elements_rtd = { 'preamble': '\\usepackage[UTF8]{ctex}\n', } latex_elements = latex_elements_user or latex_elements_rtd elif japanese: latex_engine = latex_engine_user or 'platex' # Make sure our build directory is always excluded exclude_patterns = globals().get('exclude_patterns', []) exclude_patterns.extend(['_build']) [rtd-command-info] start-time: 2022-08-26T17:37:13.922017Z, end-time: 2022-08-26T17:37:16.207183Z, duration: 2, exit-code: 0 python -m sphinx -T -E -b html -d _build/doctrees -D language=en . _build/html Running Sphinx v5.1.1 making output directory... done checking bibtex cache... out of date [autosummary] generating autosummary for: API.rst, MultiUSMesh.rst, USMesh.rst, building.rst, index.rst, options.rst, tutorial.rst loading intersphinx inventory from https://mdolab-mach-aero.readthedocs-hosted.com/en/latest/objects.inv... building [mo]: targets for 0 po files that are out of date building [html]: targets for 7 source files that are out of date updating environment: [new config] 7 added, 0 changed, 0 removed reading sources... [ 14%] API reading sources... [ 28%] MultiUSMesh reading sources... [ 42%] USMesh reading sources... [ 57%] building reading sources... [ 71%] index reading sources... [ 85%] options reading sources... [100%] tutorial looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 14%] API writing output... [ 28%] MultiUSMesh writing output... [ 42%] USMesh writing output... [ 57%] building writing output... [ 71%] index writing output... [ 85%] options writing output... [100%] tutorial generating indices... genindex done highlighting module code... [ 50%] idwarp.MultiUnstructuredMesh highlighting module code... [100%] idwarp.UnstructuredMesh writing additional pages... search done copying static files... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done Updating searchtools for Read the Docs search... build succeeded. The HTML pages are in _build/html. [rtd-command-info] start-time: 2022-08-26T17:37:16.397218Z, end-time: 2022-08-26T17:37:18.450639Z, duration: 2, exit-code: 0 python -m sphinx -T -E -b readthedocssinglehtmllocalmedia -d _build/doctrees -D language=en . _build/localmedia Running Sphinx v5.1.1 making output directory... done checking bibtex cache... out of date [autosummary] generating autosummary for: API.rst, MultiUSMesh.rst, USMesh.rst, building.rst, index.rst, options.rst, tutorial.rst loading intersphinx inventory from https://mdolab-mach-aero.readthedocs-hosted.com/en/latest/objects.inv... building [mo]: targets for 0 po files that are out of date building [readthedocssinglehtmllocalmedia]: all documents updating environment: [new config] 7 added, 0 changed, 0 removed reading sources... [ 14%] API reading sources... [ 28%] MultiUSMesh reading sources... [ 42%] USMesh reading sources... [ 57%] building reading sources... [ 71%] index reading sources... [ 85%] options reading sources... [100%] tutorial looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done assembling single document... building tutorial options API USMesh MultiUSMesh done writing... done writing additional files... done copying static files... done copying extra files... done dumping object inventory... done Updating searchtools for Read the Docs search... build succeeded. The HTML page is in _build/localmedia. [rtd-command-info] start-time: 2022-08-26T17:37:18.697528Z, end-time: 2022-08-26T17:37:19.754644Z, duration: 1, exit-code: 0 python -m sphinx -b latex -D language=en -d _build/doctrees . _build/latex Running Sphinx v5.1.1 making output directory... done loading pickled environment... checking bibtex cache... up to date done [autosummary] generating autosummary for: API.rst, MultiUSMesh.rst, USMesh.rst, building.rst, index.rst, options.rst, tutorial.rst building [mo]: targets for 0 po files that are out of date building [latex]: all documents updating environment: 0 added, 0 changed, 0 removed looking for now-outdated files... none found processing idwarp.tex... index building tutorial options API USMesh MultiUSMesh resolving references... done writing... done copying TeX support files... copying TeX support files... done WARNING: Missing searchtools: /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/checkouts/latest/doc/_build/latex/_static/searchtools.js build succeeded, 1 warning. The LaTeX files are in _build/latex. Run 'make' in that directory to run these through (pdf)latex (use `make latexpdf' here to do that automatically). [rtd-command-info] start-time: 2022-08-26T17:37:20.062067Z, end-time: 2022-08-26T17:37:20.157400Z, duration: 0, exit-code: 0 cat latexmkrc $latex = 'latex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $pdflatex = 'pdflatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $lualatex = 'lualatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $xelatex = 'xelatex --no-pdf ' . $ENV{'LATEXOPTS'} . ' %O %S'; $makeindex = 'makeindex -s python.ist %O -o %D %S'; add_cus_dep( "glo", "gls", 0, "makeglo" ); sub makeglo { return system( "makeindex -s gglo.ist -o '$_[0].gls' '$_[0].glo'" ); } [rtd-command-info] start-time: 2022-08-26T17:37:20.343852Z, end-time: 2022-08-26T17:37:21.895145Z, duration: 1, exit-code: 0 latexmk -r latexmkrc -pdf -f -dvi- -ps- -jobname=mdolab-idwarp -interaction=nonstopmode Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 4, chunk 1. Subroutine makeglo redefined at (eval 11) line 7, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 4, chunk 1. Latexmk: This is Latexmk, John Collins, 1 January 2015, version: 4.41. File::Glob::glob() will disappear in perl 5.30. Use File::Glob::bsd_glob() instead. at /usr/bin/latexmk line 7482. Rule 'pdflatex': Rules & subrules not known to be previously run: pdflatex Rule 'pdflatex': The following rules & subrules became out-of-date: 'pdflatex' ------------ Run number 1 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="mdolab-idwarp" "idwarp.tex"' ------------ Latexmk: applying rule 'pdflatex'... This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./idwarp.tex LaTeX2e <2017-04-15> Babel <3.18> and hyphenation patterns for 84 language(s) loaded. 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(version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (/usr/share/texmf/tex/latex/tex-gyre/t1qhv.fd)<><><><> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [2] [1] [2] (/usr/share/texlive/texmf-dist/tex/latex/txfonts/t1txtt.fd) [1] [2] Chapter 1. [3] [4] Chapter 2. (/usr/share/texlive/texmf-dist/tex/latex/txfonts/ts1txtt.fd) [5] LaTeX Warning: Hyper reference `options:idwarp-options' on page 6 undefined on input line 213. [6] [7] [8] Chapter 3. (/usr/share/texmf/tex/latex/tex-gyre/ts1qtm.fd) Underfull \hbox (badness 10000) in paragraph at lines 359--361 []\T1/txtt/m/n/10 OpenFOAM\T1/qtm/m/n/10 : Open- Underfull \hbox (badness 10000) in paragraph at lines 363--365 []\T1/txtt/m/n/10 PLOT3D\T1/qtm/m/n/10 : PLOT3D Underfull \hbox (badness 5316) in paragraph at lines 378--381 []|\T1/qtm/m/n/10 This op-tion is used to Underfull \hbox (badness 10000) in paragraph at lines 378--381 \T1/qtm/m/n/10 de-fault is None which Underfull \hbox (badness 10000) in paragraph at lines 378--381 \T1/qtm/m/n/10 will au-to-mat-i-cally use Underfull \hbox (badness 10000) in paragraph at lines 378--381 \T1/qtm/m/n/10 the fol-low-ing bound-ary Underfull \hbox (badness 10000) in paragraph at lines 378--381 \T1/qtm/m/n/10 condti-ions: \T1/txtt/m/n/10 BCWall\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 378--381 \T1/txtt/m/n/10 BCWallViscous\T1/qtm/m/n/10 , Overfull \hbox (7.81091pt too wide) in paragraph at lines 378--381 \T1/txtt/m/n/10 BCWallViscousHeatFlux\T1/qtm/m/n/10 , Overfull \hbox (13.0609pt too wide) in paragraph at lines 378--381 \T1/txtt/m/n/10 BCWallViscousAdiabatic\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 378--381 \T1/qtm/m/n/10 Open-FOAM files, all Underfull \hbox (badness 5316) in paragraph at lines 391--394 []|\T1/qtm/m/n/10 This op-tion is used to Underfull \hbox (badness 10000) in paragraph at lines 391--394 \T1/qtm/m/n/10 spec-ify which sur-faces Underfull \hbox (badness 10000) in paragraph at lines 391--394 \T1/qtm/m/n/10 are used to de-ter-mine Underfull \hbox (badness 10000) in paragraph at lines 391--394 \T1/qtm/m/n/10 sym-me-try planes. If Underfull \hbox (badness 10000) in paragraph at lines 391--394 \T1/qtm/m/n/10 None, ID-warp will Underfull \hbox (badness 10000) in paragraph at lines 391--394 \T1/qtm/m/n/10 au-to-mat-i-cally use the Underfull \hbox (badness 10000) in paragraph at lines 391--394 \T1/txtt/m/n/10 BCSymmetryPlane \T1/qtm/m/n/10 con- Underfull \hbox (badness 5924) in paragraph at lines 404--407 \T1/qtm/m/n/10 de-fine sym-me-try con-di- Underfull \hbox (badness 10000) in paragraph at lines 404--407 \T1/qtm/m/n/10 the \T1/txtt/m/n/10 symmetrySurfaces Underfull \hbox (badness 10000) in paragraph at lines 404--407 \T1/qtm/m/n/10 op-tion to be ac-tive, Underfull \hbox (badness 10000) in paragraph at lines 404--407 \T1/txtt/m/n/10 symmetryPlanes Underfull \hbox (badness 10000) in paragraph at lines 404--407 \T1/qtm/m/n/10 must be None. If Underfull \hbox (badness 10000) in paragraph at lines 404--407 \T1/txtt/m/n/10 symmetryPlanes \T1/qtm/m/n/10 is Underfull \hbox (badness 10000) in paragraph at lines 404--407 \T1/qtm/m/n/10 de-fines two sym-me-try Underfull \hbox (badness 10000) in paragraph at lines 404--407 \T1/qtm/m/n/10 planes us-ing a point- Underfull \hbox (badness 10000) in paragraph at lines 404--407 \T1/qtm/m/n/10 pt=(x1,y1,z1) with nor- Underfull \hbox (badness 10000) in paragraph at lines 404--407 \T1/qtm/m/n/10 The nor-mal di-rec-tion Underfull \hbox (badness 6001) in paragraph at lines 404--407 \T1/qtm/m/n/10 unit mag-ni-tude. Note Underfull \hbox (badness 6825) in paragraph at lines 417--420 []|\T1/qtm/m/n/10 This is the first ex-po- Underfull \hbox (badness 10000) in paragraph at lines 456--459 []|\T1/qtm/m/n/10 This value de-ter-mines Underfull \hbox (badness 6428) in paragraph at lines 456--459 \T1/qtm/m/n/10 of the higher ex-po-nent Underfull \hbox (badness 6575) in paragraph at lines 456--459 \T1/qtm/m/n/10 pri-or-i-tizes full blend-ing Underfull \hbox (badness 10000) in paragraph at lines 456--459 \T1/qtm/m/n/10 re-gion be-tween where Underfull \hbox (badness 8019) in paragraph at lines 469--472 \T1/qtm/m/n/10 from the sur-face. If Underfull \hbox (badness 6188) in paragraph at lines 505--508 []|\T1/qtm/m/n/10 Pos-si-bly dep-re-cated op- Underfull \hbox (badness 5302) in paragraph at lines 505--508 \T1/qtm/m/n/10 from older im-ple-men-ta- [9] Overfull \vbox (2471.16985pt too high) has occurred while \output is active [10] Chapter 4. [11] [12] [13] [14] [15] [16] [17] [18] Chapter 5. [19] [20] Chapter 6. No file mdolab-idwarp.ind. [21] (./mdolab-idwarp.aux) Package rerunfilecheck Warning: File `mdolab-idwarp.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texmf/fonts/enc /dvips/tex-gyre/q-ts1.enc}{/usr/share/texmf/fonts/enc/dvips/tex-gyre/q-ec.enc}< /usr/share/texmf/fonts/type1/public/tex-gyre/qhvb.pfb> Output written on mdolab-idwarp.pdf (25 pages, 190357 bytes). Transcript written on mdolab-idwarp.log. Latexmk: Index file 'mdolab-idwarp.idx' was written Latexmk: Missing input file: 'mdolab-idwarp.ind' from line 'No file mdolab-idwarp.ind.' Latexmk: References changed. Latexmk: References changed. Latexmk: Log file says output to 'mdolab-idwarp.pdf' Rule 'makeindex mdolab-idwarp.idx': File changes, etc: Non-existent destination files: 'mdolab-idwarp.ind' ------------ Run number 1 of rule 'makeindex mdolab-idwarp.idx' ------------ ------------ Running 'makeindex -s python.ist -o "mdolab-idwarp.ind" "mdolab-idwarp.idx"' ------------ Latexmk: applying rule 'makeindex mdolab-idwarp.idx'... This is makeindex, version 2.15 [TeX Live 2017] (kpathsea + Thai support). Scanning style file ./python.ist.......done (7 attributes redefined, 0 ignored). Scanning input file mdolab-idwarp.idx....done (29 entries accepted, 0 rejected). Sorting entries....done (161 comparisons). Generating output file mdolab-idwarp.ind....done (72 lines written, 0 warnings). Output written in mdolab-idwarp.ind. Transcript written in mdolab-idwarp.ilg. Rule 'pdflatex': File changes, etc: Changed files, or newly in use since previous run(s): 'mdolab-idwarp.aux' 'mdolab-idwarp.ind' ------------ Run number 2 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="mdolab-idwarp" "idwarp.tex"' ------------ Latexmk: applying rule 'pdflatex'... This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./idwarp.tex LaTeX2e <2017-04-15> Babel <3.18> and hyphenation patterns for 84 language(s) loaded. 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[3] [4] Chapter 2. (/usr/share/texlive/texmf-dist/tex/latex/txfonts/ts1txtt.fd) [5] [6] [7] [8] Chapter 3. (/usr/share/texmf/tex/latex/tex-gyre/ts1qtm.fd) Underfull \hbox (badness 10000) in paragraph at lines 359--361 []\T1/txtt/m/n/10 OpenFOAM\T1/qtm/m/n/10 : Open- Underfull \hbox (badness 10000) in paragraph at lines 363--365 []\T1/txtt/m/n/10 PLOT3D\T1/qtm/m/n/10 : PLOT3D Underfull \hbox (badness 5316) in paragraph at lines 378--381 []|\T1/qtm/m/n/10 This op-tion is used to Underfull \hbox (badness 10000) in paragraph at lines 378--381 \T1/qtm/m/n/10 de-fault is None which Underfull \hbox (badness 10000) in paragraph at lines 378--381 \T1/qtm/m/n/10 will au-to-mat-i-cally use Underfull \hbox (badness 10000) in paragraph at lines 378--381 \T1/qtm/m/n/10 the fol-low-ing bound-ary Underfull \hbox (badness 10000) in paragraph at lines 378--381 \T1/qtm/m/n/10 condti-ions: \T1/txtt/m/n/10 BCWall\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 378--381 \T1/txtt/m/n/10 BCWallViscous\T1/qtm/m/n/10 , Overfull \hbox (7.81091pt too wide) in paragraph at lines 378--381 \T1/txtt/m/n/10 BCWallViscousHeatFlux\T1/qtm/m/n/10 , Overfull \hbox (13.0609pt too wide) in paragraph at lines 378--381 \T1/txtt/m/n/10 BCWallViscousAdiabatic\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 378--381 \T1/qtm/m/n/10 Open-FOAM files, all Underfull \hbox (badness 5316) in paragraph at lines 391--394 []|\T1/qtm/m/n/10 This op-tion is used to Underfull \hbox (badness 10000) in paragraph at lines 391--394 \T1/qtm/m/n/10 spec-ify which sur-faces Underfull \hbox (badness 10000) in paragraph at lines 391--394 \T1/qtm/m/n/10 are used to de-ter-mine Underfull \hbox (badness 10000) in paragraph at lines 391--394 \T1/qtm/m/n/10 sym-me-try planes. 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[19] [20] Chapter 6. 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[3] [4] Chapter 2. (/usr/share/texlive/texmf-dist/tex/latex/txfonts/ts1txtt.fd) [5] [6] [7] [8] Chapter 3. (/usr/share/texmf/tex/latex/tex-gyre/ts1qtm.fd) Underfull \hbox (badness 10000) in paragraph at lines 359--361 []\T1/txtt/m/n/10 OpenFOAM\T1/qtm/m/n/10 : Open- Underfull \hbox (badness 10000) in paragraph at lines 363--365 []\T1/txtt/m/n/10 PLOT3D\T1/qtm/m/n/10 : PLOT3D Underfull \hbox (badness 5316) in paragraph at lines 378--381 []|\T1/qtm/m/n/10 This op-tion is used to Underfull \hbox (badness 10000) in paragraph at lines 378--381 \T1/qtm/m/n/10 de-fault is None which Underfull \hbox (badness 10000) in paragraph at lines 378--381 \T1/qtm/m/n/10 will au-to-mat-i-cally use Underfull \hbox (badness 10000) in paragraph at lines 378--381 \T1/qtm/m/n/10 the fol-low-ing bound-ary Underfull \hbox (badness 10000) in paragraph at lines 378--381 \T1/qtm/m/n/10 condti-ions: \T1/txtt/m/n/10 BCWall\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 378--381 \T1/txtt/m/n/10 BCWallViscous\T1/qtm/m/n/10 , Overfull \hbox (7.81091pt too wide) in paragraph at lines 378--381 \T1/txtt/m/n/10 BCWallViscousHeatFlux\T1/qtm/m/n/10 , Overfull \hbox (13.0609pt too wide) in paragraph at lines 378--381 \T1/txtt/m/n/10 BCWallViscousAdiabatic\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 378--381 \T1/qtm/m/n/10 Open-FOAM files, all Underfull \hbox (badness 5316) in paragraph at lines 391--394 []|\T1/qtm/m/n/10 This op-tion is used to Underfull \hbox (badness 10000) in paragraph at lines 391--394 \T1/qtm/m/n/10 spec-ify which sur-faces Underfull \hbox (badness 10000) in paragraph at lines 391--394 \T1/qtm/m/n/10 are used to de-ter-mine Underfull \hbox (badness 10000) in paragraph at lines 391--394 \T1/qtm/m/n/10 sym-me-try planes. If Underfull \hbox (badness 10000) in paragraph at lines 391--394 \T1/qtm/m/n/10 None, ID-warp will Underfull \hbox (badness 10000) in paragraph at lines 391--394 \T1/qtm/m/n/10 au-to-mat-i-cally use the Underfull \hbox (badness 10000) in paragraph at lines 391--394 \T1/txtt/m/n/10 BCSymmetryPlane \T1/qtm/m/n/10 con- Underfull \hbox (badness 5924) in paragraph at lines 404--407 \T1/qtm/m/n/10 de-fine sym-me-try con-di- Underfull \hbox (badness 10000) in paragraph at lines 404--407 \T1/qtm/m/n/10 the \T1/txtt/m/n/10 symmetrySurfaces Underfull \hbox (badness 10000) in paragraph at lines 404--407 \T1/qtm/m/n/10 op-tion to be ac-tive, Underfull \hbox (badness 10000) in paragraph at lines 404--407 \T1/txtt/m/n/10 symmetryPlanes Underfull \hbox (badness 10000) in paragraph at lines 404--407 \T1/qtm/m/n/10 must be None. If Underfull \hbox (badness 10000) in paragraph at lines 404--407 \T1/txtt/m/n/10 symmetryPlanes \T1/qtm/m/n/10 is Underfull \hbox (badness 10000) in paragraph at lines 404--407 \T1/qtm/m/n/10 de-fines two sym-me-try Underfull \hbox (badness 10000) in paragraph at lines 404--407 \T1/qtm/m/n/10 planes us-ing a point- Underfull \hbox (badness 10000) in paragraph at lines 404--407 \T1/qtm/m/n/10 pt=(x1,y1,z1) with nor- Underfull \hbox (badness 10000) in paragraph at lines 404--407 \T1/qtm/m/n/10 The nor-mal di-rec-tion Underfull \hbox (badness 6001) in paragraph at lines 404--407 \T1/qtm/m/n/10 unit mag-ni-tude. Note Underfull \hbox (badness 6825) in paragraph at lines 417--420 []|\T1/qtm/m/n/10 This is the first ex-po- Underfull \hbox (badness 10000) in paragraph at lines 456--459 []|\T1/qtm/m/n/10 This value de-ter-mines Underfull \hbox (badness 6428) in paragraph at lines 456--459 \T1/qtm/m/n/10 of the higher ex-po-nent Underfull \hbox (badness 6575) in paragraph at lines 456--459 \T1/qtm/m/n/10 pri-or-i-tizes full blend-ing Underfull \hbox (badness 10000) in paragraph at lines 456--459 \T1/qtm/m/n/10 re-gion be-tween where Underfull \hbox (badness 8019) in paragraph at lines 469--472 \T1/qtm/m/n/10 from the sur-face. If Underfull \hbox (badness 6188) in paragraph at lines 505--508 []|\T1/qtm/m/n/10 Pos-si-bly dep-re-cated op- Underfull \hbox (badness 5302) in paragraph at lines 505--508 \T1/qtm/m/n/10 from older im-ple-men-ta- [9] Overfull \vbox (2471.16985pt too high) has occurred while \output is active [10] Chapter 4. [11] [12] [13] [14] [15] [16] [17] [18] Chapter 5. [19] [20] Chapter 6. (./mdolab-idwarp.ind [21] [22] Overfull \hbox (1.97232pt too wide) in paragraph at lines 9--11 []\T1/txtt/m/n/10 getdXs() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 id-warp.MultiUnstruc turedMesh.MultiUSMesh Underfull \hbox (badness 10000) in paragraph at lines 12--14 []\T1/txtt/m/n/10 getSolverGrid() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 id- Underfull \hbox (badness 10000) in paragraph at lines 12--14 \T1/qtm/m/it/10 warp.MultiUnstructuredMesh.MultiUSMesh Underfull \hbox (badness 10000) in paragraph at lines 15--17 []\T1/txtt/m/n/10 getSurfaceCoordinates() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 id- Underfull \hbox (badness 10000) in paragraph at lines 15--17 \T1/qtm/m/it/10 warp.MultiUnstructuredMesh.MultiUSMesh Underfull \hbox (badness 10000) in paragraph at lines 17--19 []\T1/txtt/m/n/10 getSurfaceCoordinates() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 id- Underfull \hbox (badness 10000) in paragraph at lines 17--19 \T1/qtm/m/it/10 warp.UnstructuredMesh.USMesh method\T1/qtm/m/n/10 ), Overfull \hbox (28.22224pt too wide) in paragraph at lines 19--21 []\T1/txtt/m/n/10 getWarpGrid() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 id-warp.MultiUn structuredMesh.MultiUSMesh Underfull \hbox (badness 10000) in paragraph at lines 21--22 []\T1/txtt/m/n/10 getWarpGrid() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 id-warp.Unstruc turedMesh.USMesh Underfull \hbox (badness 10000) in paragraph at lines 29--31 []\T1/txtt/m/n/10 setExternalMeshIndices() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 id- Underfull \hbox (badness 10000) in paragraph at lines 29--31 \T1/qtm/m/it/10 warp.MultiUnstructuredMesh.MultiUSMesh Underfull \hbox (badness 10000) in paragraph at lines 31--33 []\T1/txtt/m/n/10 setExternalMeshIndices() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 id- Underfull \hbox (badness 10000) in paragraph at lines 31--33 \T1/qtm/m/it/10 warp.UnstructuredMesh.USMesh method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 33--35 []\T1/txtt/m/n/10 setSurfaceCoordinates() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 id- Underfull \hbox (badness 10000) in paragraph at lines 33--35 \T1/qtm/m/it/10 warp.MultiUnstructuredMesh.MultiUSMesh Underfull \hbox (badness 10000) in paragraph at lines 35--37 []\T1/txtt/m/n/10 setSurfaceCoordinates() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 id- Underfull \hbox (badness 10000) in paragraph at lines 35--37 \T1/qtm/m/it/10 warp.UnstructuredMesh.USMesh method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 37--39 []\T1/txtt/m/n/10 setSurfaceDefinition() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 id- Underfull \hbox (badness 10000) in paragraph at lines 37--39 \T1/qtm/m/it/10 warp.MultiUnstructuredMesh.MultiUSMesh Underfull \hbox (badness 10000) in paragraph at lines 39--41 []\T1/txtt/m/n/10 setSurfaceDefinition() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 id- Underfull \hbox (badness 10000) in paragraph at lines 39--41 \T1/qtm/m/it/10 warp.UnstructuredMesh.USMesh method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 41--43 []\T1/txtt/m/n/10 setSurfaceDefinitionFromFile() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 id- Underfull \hbox (badness 10000) in paragraph at lines 41--43 \T1/qtm/m/it/10 warp.UnstructuredMesh.USMesh method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 43--45 []\T1/txtt/m/n/10 setSurfaceFromFile() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 id- Underfull \hbox (badness 10000) in paragraph at lines 43--45 \T1/qtm/m/it/10 warp.UnstructuredMesh.USMesh method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 52--54 []\T1/txtt/m/n/10 verifyWarpDeriv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 id- Underfull \hbox (badness 10000) in paragraph at lines 52--54 \T1/qtm/m/it/10 warp.UnstructuredMesh.USMesh method\T1/qtm/m/n/10 ), Overfull \hbox (17.72227pt too wide) in paragraph at lines 57--59 []\T1/txtt/m/n/10 warpDeriv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 id-warp.MultiUnst ructuredMesh.MultiUSMesh Underfull \hbox (badness 10000) in paragraph at lines 59--60 []\T1/txtt/m/n/10 warpDeriv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 id-warp.Unstructu redMesh.USMesh Overfull \hbox (33.47223pt too wide) in paragraph at lines 60--62 []\T1/txtt/m/n/10 warpDerivFwd() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 id-warp.MultiU nstructuredMesh.MultiUSMesh Underfull \hbox (badness 10000) in paragraph at lines 62--63 []\T1/txtt/m/n/10 warpDerivFwd() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 id-warp.Unstru cturedMesh.USMesh Overfull \hbox (12.47229pt too wide) in paragraph at lines 63--65 []\T1/txtt/m/n/10 warpMesh() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 id-warp.MultiUnstr ucturedMesh.MultiUSMesh Underfull \hbox (badness 10000) in paragraph at lines 65--66 []\T1/txtt/m/n/10 warpMesh() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 id-warp.Unstructur edMesh.USMesh Overfull \hbox (17.72227pt too wide) in paragraph at lines 66--68 []\T1/txtt/m/n/10 writeGrid() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 id-warp.MultiUnst ructuredMesh.MultiUSMesh Underfull \hbox (badness 10000) in paragraph at lines 68--69 []\T1/txtt/m/n/10 writeGrid() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 id-warp.Unstructu redMesh.USMesh Underfull \hbox (badness 10000) in paragraph at lines 69--71 []\T1/txtt/m/n/10 writeOFGridTecplot() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 id- Underfull \hbox (badness 10000) in paragraph at lines 69--71 \T1/qtm/m/it/10 warp.UnstructuredMesh.USMesh method\T1/qtm/m/n/10 ), [23]) (./mdolab-idwarp.aux) ) (see the transcript file for additional information){/usr/share/texmf/fonts/enc /dvips/tex-gyre/q-ts1.enc}{/usr/share/texmf/fonts/enc/dvips/tex-gyre/q-ec.enc}< /usr/share/texmf/fonts/type1/public/tex-gyre/qhvb.pfb> Output written on mdolab-idwarp.pdf (27 pages, 196406 bytes). Transcript written on mdolab-idwarp.log. Latexmk: Index file 'mdolab-idwarp.idx' was written Latexmk: Log file says output to 'mdolab-idwarp.pdf' Latexmk: All targets (mdolab-idwarp.pdf) are up-to-date [rtd-command-info] start-time: 2022-08-26T17:37:22.098209Z, end-time: 2022-08-26T17:37:22.192864Z, duration: 0, exit-code: 0 mv -f /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/checkouts/latest/doc/_build/latex/mdolab-idwarp.pdf /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/artifacts/latest/sphinx_pdf/mdolab-idwarp.pdf [rtd-command-info] start-time: 2022-08-26T17:37:22.477233Z, end-time: 2022-08-26T17:37:24.429453Z, duration: 1, exit-code: 0 python -m sphinx -T -E -b epub -d _build/doctrees -D language=en . _build/epub Running Sphinx v5.1.1 making output directory... done checking bibtex cache... out of date WARNING: conf value "version" should not be empty for EPUB3 [autosummary] generating autosummary for: API.rst, MultiUSMesh.rst, USMesh.rst, building.rst, index.rst, options.rst, tutorial.rst loading intersphinx inventory from https://mdolab-mach-aero.readthedocs-hosted.com/en/latest/objects.inv... building [mo]: targets for 0 po files that are out of date building [epub]: targets for 7 source files that are out of date updating environment: [new config] 7 added, 0 changed, 0 removed reading sources... 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