Read the Docs build information Build id: 106652 Project: cyverse-astrocontainers-workshop-2018 Version: latest Commit: 32ac8005313fc464705742b23e574501fba94248 Date: 2018-05-07T00:49:27.691947Z State: finished Success: True [rtd-command-info] start-time: 2018-05-07T05:49:28.266537Z, end-time: 2018-05-07T05:49:28.281219Z, duration: 0, exit-code: 0 git remote set-url origin https://github.com/CyVerse-learning-materials/astrocontainers_workshop_2018.git [rtd-command-info] start-time: 2018-05-07T05:49:28.344037Z, end-time: 2018-05-07T05:49:28.737842Z, duration: 0, exit-code: 0 git fetch --tags --prune From https://github.com/CyVerse-learning-materials/astrocontainers_workshop_2018 fae34bf..32ac800 master -> origin/master [rtd-command-info] start-time: 2018-05-07T05:49:28.813015Z, end-time: 2018-05-07T05:49:28.824716Z, duration: 0, exit-code: 0 git checkout --force origin/master Previous HEAD position was fae34bf... Update singularityintro.rst HEAD is now at 32ac800... Update files and images [rtd-command-info] start-time: 2018-05-07T05:49:28.886863Z, end-time: 2018-05-07T05:49:28.895698Z, duration: 0, exit-code: 0 git clean -d -f -f Removing misc/__init__.pyc Removing misc/cyverse_sphinx_conf.pyc [rtd-command-info] start-time: 2018-05-07T05:49:28.994052Z, end-time: 2018-05-07T05:49:29.002182Z, duration: 0, exit-code: 0 git show-ref --tags [rtd-command-info] start-time: 2018-05-07T05:49:29.066299Z, end-time: 2018-05-07T05:49:29.076639Z, duration: 0, exit-code: 0 git branch -r origin/HEAD -> origin/master origin/master [rtd-command-info] start-time: 2018-05-07T05:49:30.181209Z, end-time: 2018-05-07T05:49:31.927370Z, duration: 1, exit-code: 0 python2.7 -mvirtualenv --no-site-packages --no-download New python executable in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/bin/python2.7 Not overwriting existing python script /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/bin/python (you must use /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/bin/python2.7) Installing setuptools, pip, wheel...done. [rtd-command-info] start-time: 2018-05-07T05:49:32.041213Z, end-time: 2018-05-07T05:49:34.541526Z, duration: 2, exit-code: 0 python pip install --use-wheel --upgrade --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/.cache/pip Pygments==2.2.0 setuptools<40 docutils==0.13.1 mock==1.0.1 pillow==2.6.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.5.4 recommonmark==0.4.0 sphinx==1.6.5 sphinx-rtd-theme<0.3 readthedocs-sphinx-ext<0.6 Requirement already up-to-date: Pygments==2.2.0 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages Requirement already up-to-date: setuptools<40 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages Requirement already up-to-date: docutils==0.13.1 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages Requirement already up-to-date: mock==1.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages Requirement already up-to-date: pillow==2.6.1 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages Requirement already up-to-date: alabaster!=0.7.5,<0.8,>=0.7 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages Requirement already up-to-date: commonmark==0.5.4 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages Requirement already up-to-date: recommonmark==0.4.0 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages Requirement already up-to-date: sphinx==1.6.5 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages Requirement already up-to-date: sphinx-rtd-theme<0.3 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages Requirement already up-to-date: readthedocs-sphinx-ext<0.6 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages Requirement already up-to-date: sphinxcontrib-websupport in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from sphinx==1.6.5) Requirement already up-to-date: six>=1.5 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from sphinx==1.6.5) Requirement already up-to-date: requests>=2.0.0 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from sphinx==1.6.5) Requirement already up-to-date: typing; python_version < "3.5" in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from sphinx==1.6.5) Requirement already up-to-date: imagesize in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from sphinx==1.6.5) Requirement already up-to-date: babel!=2.0,>=1.3 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from sphinx==1.6.5) Requirement already up-to-date: snowballstemmer>=1.1 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from sphinx==1.6.5) Requirement already up-to-date: Jinja2>=2.3 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from sphinx==1.6.5) Requirement already up-to-date: nilsimsa>=0.3.7 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from readthedocs-sphinx-ext<0.6) Requirement already up-to-date: urllib3<1.23,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from requests>=2.0.0->sphinx==1.6.5) Requirement already up-to-date: idna<2.7,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from requests>=2.0.0->sphinx==1.6.5) Requirement already up-to-date: chardet<3.1.0,>=3.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from requests>=2.0.0->sphinx==1.6.5) Requirement already up-to-date: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from requests>=2.0.0->sphinx==1.6.5) Requirement already up-to-date: pytz>=0a in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from babel!=2.0,>=1.3->sphinx==1.6.5) Requirement already up-to-date: MarkupSafe>=0.23 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from Jinja2>=2.3->sphinx==1.6.5) You are using pip version 9.0.1, however version 10.0.1 is available. You should consider upgrading via the 'pip install --upgrade pip' command. [rtd-command-info] start-time: 2018-05-07T05:49:34.618125Z, end-time: 2018-05-07T05:49:35.161524Z, duration: 0, exit-code: 0 python pip install --exists-action=w --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/.cache/pip -r/home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt Requirement already satisfied: sphinx in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from -r /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt (line 1)) Requirement already satisfied: recommonmark in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from -r /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt (line 2)) Requirement already satisfied: sphinxcontrib-images in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from -r /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt (line 3)) Requirement already satisfied: sphinx_bootstrap_theme in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from -r /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt (line 4)) Requirement already satisfied: guzzle_sphinx_theme==0.7.11 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from -r /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt (line 5)) Requirement already satisfied: sphinxcontrib-websupport in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from sphinx->-r /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt (line 1)) Requirement already satisfied: six>=1.5 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from sphinx->-r /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt (line 1)) Requirement already satisfied: requests>=2.0.0 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from sphinx->-r /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt (line 1)) Requirement already satisfied: docutils>=0.11 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from sphinx->-r /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt (line 1)) Requirement already satisfied: typing; python_version < "3.5" in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from sphinx->-r /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt (line 1)) Requirement already satisfied: Pygments>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from sphinx->-r /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt (line 1)) Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from sphinx->-r /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt (line 1)) Requirement already satisfied: imagesize in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from sphinx->-r /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt (line 1)) Requirement already satisfied: babel!=2.0,>=1.3 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from sphinx->-r /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt (line 1)) Requirement already satisfied: snowballstemmer>=1.1 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from sphinx->-r /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt (line 1)) Requirement already satisfied: Jinja2>=2.3 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from sphinx->-r /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt (line 1)) Requirement already satisfied: alabaster<0.8,>=0.7 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from sphinx->-r /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt (line 1)) Requirement already satisfied: commonmark<=0.5.4 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from recommonmark->-r /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt (line 2)) Requirement already satisfied: urllib3<1.23,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from requests>=2.0.0->sphinx->-r /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt (line 1)) Requirement already satisfied: idna<2.7,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from requests>=2.0.0->sphinx->-r /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt (line 1)) Requirement already satisfied: chardet<3.1.0,>=3.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from requests>=2.0.0->sphinx->-r /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt (line 1)) Requirement already satisfied: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from requests>=2.0.0->sphinx->-r /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt (line 1)) Requirement already satisfied: pytz>=0a in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from babel!=2.0,>=1.3->sphinx->-r /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt (line 1)) Requirement already satisfied: MarkupSafe>=0.23 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from Jinja2>=2.3->sphinx->-r /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt (line 1)) You are using pip version 9.0.1, however version 10.0.1 is available. You should consider upgrading via the 'pip install --upgrade pip' command. [rtd-command-info] start-time: 2018-05-07T05:49:35.829109Z, end-time: 2018-05-07T05:49:35.892573Z, duration: 0, exit-code: 0 cat conf.py #!/usr/bin/env python3 # -*- coding: utf-8 -*- # # General information about the project. import sys import os sys.path.insert(0, os.path.dirname(__file__)) from misc.cyverse_sphinx_conf import * # noqa project = 'CyVerse AstroContainers Workshop: Learning Docker and Singularity' copyright = '2018, CyVerse' author = 'CyVerse' version = '0.1.0' release = '0.1.0' epub_title = project epub_author = author epub_publisher = author epub_copyright = copyright ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # import sys import os.path from six import string_types from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix else: SUFFIX = source_suffix[0] else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') html_static_path.append('/home/docs/checkouts/readthedocs.org/readthedocs/templates/sphinx/_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = False if 'html_theme' in globals(): if html_theme in ['default']: # Allow people to bail with a hack of having an html_style if not 'html_style' in globals(): import sphinx_rtd_theme html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(sphinx_rtd_theme.get_html_theme_path()) else: html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] using_rtd_theme = True else: import sphinx_rtd_theme html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(sphinx_rtd_theme.get_html_theme_path()) else: html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] using_rtd_theme = True if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.com/websupport' if 'http' not in settings.MEDIA_URL: websupport2_static_url = 'https://media.readthedocs.com/' else: websupport2_static_url = 'https://media.readthedocs.com/media//static' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "latest", 'version_slug': "latest", 'MEDIA_URL': "https://media.readthedocs.com/media/", 'PRODUCTION_DOMAIN': "readthedocs.com", 'versions': [ ("latest", "/en/latest/"), ], 'downloads': [ ("pdf", "//readthedocs.com/projects/cyverse-astrocontainers-workshop-2018/downloads/pdf/latest/"), ("htmlzip", "//readthedocs.com/projects/cyverse-astrocontainers-workshop-2018/downloads/htmlzip/latest/"), ("epub", "//readthedocs.com/projects/cyverse-astrocontainers-workshop-2018/downloads/epub/latest/"), ], 'subprojects': [ ], 'slug': 'cyverse-astrocontainers-workshop-2018', 'name': u'astrocontainers_workshop_2018', 'rtd_language': u'en', 'programming_language': u'words', 'canonical_url': 'https://cyverse-astrocontainers-workshop-2018.readthedocs-hosted.com/en/latest/', 'analytics_code': '', 'single_version': False, 'conf_py_path': '/./', 'api_host': 'https://readthedocs.com', 'github_user': 'CyVerse-learning-materials', 'github_repo': 'astrocontainers_workshop_2018', 'github_version': 'master', 'display_github': True, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'master', 'display_bitbucket': False, 'gitlab_user': 'None', 'gitlab_repo': 'None', 'gitlab_version': 'master', 'display_gitlab': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'user_analytics_code': '', 'global_analytics_code': 'UA-17997319-2', 'commit': '32ac8005', } if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): extensions.append("readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] [rtd-command-info] start-time: 2018-05-07T05:49:35.970516Z, end-time: 2018-05-07T05:49:41.831241Z, duration: 5, exit-code: 0 python sphinx-build -T -E -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html Running Sphinx v1.6.5 making output directory... loading translations [en]... done building [mo]: targets for 0 po files that are out of date building [readthedocs]: targets for 18 source files that are out of date updating environment: 18 added, 0 changed, 0 removed reading sources... 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[rtd-command-info] start-time: 2018-05-07T05:49:45.891947Z, end-time: 2018-05-07T05:49:47.802647Z, duration: 1, exit-code: 0 python sphinx-build -b latex -D language=en -d _build/doctrees . _build/latex Running Sphinx v1.6.5 making output directory... loading translations [en]... done loading pickled environment... done building [mo]: targets for 0 po files that are out of date building [latex]: all documents updating environment: 0 added, 4 changed, 0 removed reading sources... [ 25%] docker/dockerdemos reading sources... [ 50%] docker/dockerintro reading sources... [ 75%] getting_started/installation reading sources... 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[29] [30 <./static_site_docker.png>] Underfull \hbox (badness 10000) in paragraph at lines 1168--1169 []\T1/ptm/m/n/10 If you are run-ning Docker on At-mo-sphere/Jetstream or on any other cloud, you can open [31 <./static_site_docker1.png>] ! Package inputenc Error: Unicode char   (U+200A) (inputenc) not set up for use with LaTeX. See the inputenc package documentation for explanation. Type H for immediate help. ... l.1253 ...your version of Linux/Windows/OSX/OS9  — well this is where D... ! Package inputenc Error: Unicode char   (U+200A) (inputenc) not set up for use with LaTeX. See the inputenc package documentation for explanation. Type H for immediate help. ... l.1253 ...ersion of Linux/Windows/OSX/OS9 —  well this is where Docker ... 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Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `\sphinxstylestrong' on input line 3914. No file CyVerseDocumentation.ind. [119] (./CyVerseDocumentation.aux) Package rerunfilecheck Warning: File `CyVerseDocumentation.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on CyVerseDocumentation.pdf (123 pages, 4556567 bytes). Transcript written on CyVerseDocumentation.log. [rtd-command-info] start-time: 2018-05-07T05:49:56.549832Z, end-time: 2018-05-07T05:49:56.686011Z, duration: 0, exit-code: 0 makeindex -s python.ist CyVerseDocumentation.idx This is makeindex, version 2.15 [TeX Live 2015] (kpathsea + Thai support). 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[29] [30 <./static_site_docker.png>] Underfull \hbox (badness 10000) in paragraph at lines 1168--1169 []\T1/ptm/m/n/10 If you are run-ning Docker on At-mo-sphere/Jetstream or on any other cloud, you can open [31 <./static_site_docker1.png>] ! Package inputenc Error: Unicode char   (U+200A) (inputenc) not set up for use with LaTeX. See the inputenc package documentation for explanation. Type H for immediate help. ... l.1253 ...your version of Linux/Windows/OSX/OS9  — well this is where D... ! Package inputenc Error: Unicode char   (U+200A) (inputenc) not set up for use with LaTeX. See the inputenc package documentation for explanation. Type H for immediate help. ... l.1253 ...ersion of Linux/Windows/OSX/OS9 —  well this is where Docker ... 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[39] Overfull \vbox (11.56995pt too high) detected at line 1422 [40] [41] [42] [43] [44] Underfull \hbox (badness 10000) in paragraph at lines 1658--1660 \T1/ptm/b/n/10 Note: \T1/ptm/m/n/10 When you run the \T1/pcr/m/n/10 docker bui ld \T1/ptm/m/n/10 com-mand given be-low, make sure to re-place [45] Overfull \hbox (94.85628pt too wide) in paragraph at lines 1741--1742 [][] [46] [47 <./catpic-1.png>] [48] [49] Overfull \hbox (94.866pt too wide) in paragraph at lines 1886--1887 [][] [50 <./docker_image.png>] Overfull \hbox (94.84293pt too wide) in paragraph at lines 1925--1926 [][] [51] Overfull \vbox (8.54036pt too high) detected at line 1939 [52 <./private_registry.png>] [53] Overfull \hbox (94.83699pt too wide) in paragraph at lines 2037--2038 [][] [54] [55 <./auto_build-1.png>] Overfull \hbox (94.84164pt too wide) in paragraph at lines 2085--2086 [][] [56] Overfull \hbox (94.81732pt too wide) in paragraph at lines 2093--2094 [][] [57 <./create_repo.png>] Overfull \vbox (1.54773pt too high) detected at line 2107 [58 <./create_repo2.png>] Overfull \hbox (94.83147pt too wide) in paragraph at lines 2129--2130 [][] [59] Overfull \hbox (94.83147pt too wide) in paragraph at lines 2141--2142 [][] [60 <./auto_build-2.png>] [61 <./auto_build-2.1.png>] Overfull \hbox (94.86179pt too wide) in paragraph at lines 2187--2188 [][] [62] Overfull \hbox (94.84714pt too wide) in paragraph at lines 2195--2196 [][] [63 <./auto_build-5.png>] Overfull \hbox (94.84714pt too wide) in paragraph at lines 2211--2212 [][] [64 <./auto_build-6.png>] [65 <./auto_build-7.png>] [66] [67] Overfull \hbox (94.86829pt too wide) in paragraph at lines 2437--2438 [][] [68] [69 <./dc-1.png>] [70] Chapter 9. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `\sphinxstylestrong' on input line 2457. [71] [72 <./portainer_demo.png>] [73 <./pwd.png>] [74] Chapter 10. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `\sphinxstylestrong' on input line 2514. [75 <./singularity.png>] Overfull \hbox (800.25983pt too wide) in paragraph at lines 2558--2559 [][] [76 <./singularity-2.4-flow.png>] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90] Chapter 11. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `\sphinxstylestrong' on input line 3392. [91] [92] [93] [94] [95] [96] Chapter 12. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `\sphinxstylestrong' on input line 3588. Overfull \hbox (94.855pt too wide) in paragraph at lines 3610--3611 [][] [97] Overfull \hbox (94.855pt too wide) in paragraph at lines 3629--3630 [][] [98 <./atmo-1.png>] Overfull \hbox (94.855pt too wide) in paragraph at lines 3636--3637 [][] [99 <./atmo_cp0.png>] Overfull \hbox (94.855pt too wide) in paragraph at lines 3652--3653 [][] [100 <./atmo_cp.png>] Overfull \hbox (94.855pt too wide) in paragraph at lines 3659--3660 [][] [101 <./atmo_launch0.png>] Overfull \hbox (94.855pt too wide) in paragraph at lines 3669--3670 [][] [102 <./atmo_launch1.png>] Overfull \hbox (94.855pt too wide) in paragraph at lines 3679--3680 [][] [103 <./atmo_launch.png>] Overfull \hbox (94.855pt too wide) in paragraph at lines 3692--3693 [][] [104 <./atmo-6.png>] Overfull \hbox (94.855pt too wide) in paragraph at lines 3708--3709 [][] [105 <./atmo-7.png>] Overfull \hbox (94.855pt too wide) in paragraph at lines 3715--3716 [][] [106 <./atmo-8.png>] [107 <./atmo-9.png>] [108] Chapter 13. 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Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `\sphinxstylestrong' on input line 3914. (./CyVerseDocumentation.ind) [119] (./CyVerseDocumentation.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on CyVerseDocumentation.pdf (123 pages, 4449918 bytes). Transcript written on CyVerseDocumentation.log. 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