Read the Docs build information
Build id: 106241
Project: cyverse-astrocontainers-workshop-2018
Version: latest
Commit: 9430898aafbbd842ee35ae97856713f375d687c4
Date: 2018-05-04T10:22:15.155556Z
State: finished
Success: True


[rtd-command-info] start-time: 2018-05-04T15:22:15.717679Z, end-time: 2018-05-04T15:22:15.726496Z, duration: 0, exit-code: 0
git remote set-url origin https://github.com/CyVerse-learning-materials/astrocontainers_workshop_2018.git


[rtd-command-info] start-time: 2018-05-04T15:22:15.792929Z, end-time: 2018-05-04T15:22:16.058964Z, duration: 0, exit-code: 0
git fetch --tags --prune
From https://github.com/CyVerse-learning-materials/astrocontainers_workshop_2018
 + 75f1558...9430898 master     -> origin/master  (forced update)

[rtd-command-info] start-time: 2018-05-04T15:22:16.135359Z, end-time: 2018-05-04T15:22:16.144650Z, duration: 0, exit-code: 0
git checkout --force origin/master
Warning: you are leaving 1 commit behind, not connected to
any of your branches:

  75f1558 Clean up exercise titles

If you want to keep it by creating a new branch, this may be a good time
to do so with:

 git branch <new-branch-name> 75f1558

HEAD is now at 9430898... Clean up session titles

[rtd-command-info] start-time: 2018-05-04T15:22:16.218431Z, end-time: 2018-05-04T15:22:16.227150Z, duration: 0, exit-code: 0
git clean -d -f -f
Removing misc/__init__.pyc
Removing misc/cyverse_sphinx_conf.pyc

[rtd-command-info] start-time: 2018-05-04T15:22:16.336197Z, end-time: 2018-05-04T15:22:16.342341Z, duration: 0, exit-code: 0
git show-ref --tags


[rtd-command-info] start-time: 2018-05-04T15:22:16.408433Z, end-time: 2018-05-04T15:22:16.416953Z, duration: 0, exit-code: 0
git branch -r
origin/HEAD -> origin/master
  origin/master

[rtd-command-info] start-time: 2018-05-04T15:22:17.404869Z, end-time: 2018-05-04T15:22:19.022114Z, duration: 1, exit-code: 0
python2.7 -mvirtualenv --no-site-packages --no-download 
New python executable in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/bin/python2.7
Not overwriting existing python script /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/bin/python (you must use /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/bin/python2.7)
Installing setuptools, pip, wheel...done.

[rtd-command-info] start-time: 2018-05-04T15:22:19.091782Z, end-time: 2018-05-04T15:22:21.552478Z, duration: 2, exit-code: 0
python pip install --use-wheel --upgrade --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/.cache/pip Pygments==2.2.0 setuptools<40 docutils==0.13.1 mock==1.0.1 pillow==2.6.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.5.4 recommonmark==0.4.0 sphinx==1.6.5 sphinx-rtd-theme<0.3 readthedocs-sphinx-ext<0.6
Requirement already up-to-date: Pygments==2.2.0 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages
Requirement already up-to-date: setuptools<40 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages
Requirement already up-to-date: docutils==0.13.1 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages
Requirement already up-to-date: mock==1.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages
Requirement already up-to-date: pillow==2.6.1 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages
Requirement already up-to-date: alabaster!=0.7.5,<0.8,>=0.7 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages
Requirement already up-to-date: commonmark==0.5.4 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages
Requirement already up-to-date: recommonmark==0.4.0 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages
Requirement already up-to-date: sphinx==1.6.5 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages
Requirement already up-to-date: sphinx-rtd-theme<0.3 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages
Requirement already up-to-date: readthedocs-sphinx-ext<0.6 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages
Requirement already up-to-date: sphinxcontrib-websupport in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from sphinx==1.6.5)
Requirement already up-to-date: six>=1.5 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from sphinx==1.6.5)
Requirement already up-to-date: requests>=2.0.0 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from sphinx==1.6.5)
Requirement already up-to-date: typing; python_version < "3.5" in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from sphinx==1.6.5)
Requirement already up-to-date: imagesize in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from sphinx==1.6.5)
Requirement already up-to-date: babel!=2.0,>=1.3 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from sphinx==1.6.5)
Requirement already up-to-date: snowballstemmer>=1.1 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from sphinx==1.6.5)
Requirement already up-to-date: Jinja2>=2.3 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from sphinx==1.6.5)
Requirement already up-to-date: nilsimsa>=0.3.7 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from readthedocs-sphinx-ext<0.6)
Requirement already up-to-date: urllib3<1.23,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from requests>=2.0.0->sphinx==1.6.5)
Requirement already up-to-date: idna<2.7,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from requests>=2.0.0->sphinx==1.6.5)
Requirement already up-to-date: chardet<3.1.0,>=3.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from requests>=2.0.0->sphinx==1.6.5)
Requirement already up-to-date: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from requests>=2.0.0->sphinx==1.6.5)
Requirement already up-to-date: pytz>=0a in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from babel!=2.0,>=1.3->sphinx==1.6.5)
Requirement already up-to-date: MarkupSafe>=0.23 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from Jinja2>=2.3->sphinx==1.6.5)
You are using pip version 9.0.1, however version 10.0.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.

[rtd-command-info] start-time: 2018-05-04T15:22:21.643992Z, end-time: 2018-05-04T15:22:22.189841Z, duration: 0, exit-code: 0
python pip install --exists-action=w --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/.cache/pip -r/home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt
Requirement already satisfied: sphinx in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from -r /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt (line 1))
Requirement already satisfied: recommonmark in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from -r /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt (line 2))
Requirement already satisfied: sphinxcontrib-images in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from -r /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt (line 3))
Requirement already satisfied: sphinx_bootstrap_theme in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from -r /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt (line 4))
Requirement already satisfied: guzzle_sphinx_theme==0.7.11 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from -r /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt (line 5))
Requirement already satisfied: sphinxcontrib-websupport in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from sphinx->-r /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt (line 1))
Requirement already satisfied: six>=1.5 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from sphinx->-r /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt (line 1))
Requirement already satisfied: requests>=2.0.0 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from sphinx->-r /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt (line 1))
Requirement already satisfied: docutils>=0.11 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from sphinx->-r /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt (line 1))
Requirement already satisfied: typing; python_version < "3.5" in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from sphinx->-r /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt (line 1))
Requirement already satisfied: Pygments>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from sphinx->-r /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt (line 1))
Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from sphinx->-r /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt (line 1))
Requirement already satisfied: imagesize in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from sphinx->-r /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt (line 1))
Requirement already satisfied: babel!=2.0,>=1.3 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from sphinx->-r /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt (line 1))
Requirement already satisfied: snowballstemmer>=1.1 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from sphinx->-r /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt (line 1))
Requirement already satisfied: Jinja2>=2.3 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from sphinx->-r /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt (line 1))
Requirement already satisfied: alabaster<0.8,>=0.7 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from sphinx->-r /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt (line 1))
Requirement already satisfied: commonmark<=0.5.4 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from recommonmark->-r /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt (line 2))
Requirement already satisfied: urllib3<1.23,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from requests>=2.0.0->sphinx->-r /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt (line 1))
Requirement already satisfied: idna<2.7,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from requests>=2.0.0->sphinx->-r /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt (line 1))
Requirement already satisfied: chardet<3.1.0,>=3.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from requests>=2.0.0->sphinx->-r /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt (line 1))
Requirement already satisfied: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from requests>=2.0.0->sphinx->-r /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt (line 1))
Requirement already satisfied: pytz>=0a in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from babel!=2.0,>=1.3->sphinx->-r /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt (line 1))
Requirement already satisfied: MarkupSafe>=0.23 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from Jinja2>=2.3->sphinx->-r /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt (line 1))
You are using pip version 9.0.1, however version 10.0.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.

[rtd-command-info] start-time: 2018-05-04T15:22:22.768995Z, end-time: 2018-05-04T15:22:22.831065Z, duration: 0, exit-code: 0
cat conf.py
#!/usr/bin/env python3
# -*- coding: utf-8 -*-
#
# General information about the project.

import sys
import os
sys.path.insert(0, os.path.dirname(__file__))

from misc.cyverse_sphinx_conf import *  # noqa

project = 'CyVerse AstroContainers Workshop: Learning Docker and Singularity'
copyright = '2018, CyVerse'
author = 'CyVerse'
version = '0.1.0'
release = '0.1.0'

epub_title = project
epub_author = author
epub_publisher = author
epub_copyright = copyright




###########################################################################
#          auto-created readthedocs.org specific configuration            #
###########################################################################


#
# The following code was added during an automated build on readthedocs.org
# It is auto created and injected for every build. The result is based on the
# conf.py.tmpl file found in the readthedocs.org codebase:
# https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl
#


import sys
import os.path
from six import string_types

from sphinx import version_info

# Get suffix for proper linking to GitHub
# This is deprecated in Sphinx 1.3+,
# as each page can have its own suffix
if globals().get('source_suffix', False):
    if isinstance(source_suffix, string_types):
        SUFFIX = source_suffix
    else:
        SUFFIX = source_suffix[0]
else:
    SUFFIX = '.rst'

# Add RTD Static Path. Add to the end because it overwrites previous files.
if not 'html_static_path' in globals():
    html_static_path = []
if os.path.exists('_static'):
    html_static_path.append('_static')
html_static_path.append('/home/docs/checkouts/readthedocs.org/readthedocs/templates/sphinx/_static')

# Add RTD Theme only if they aren't overriding it already
using_rtd_theme = False
if 'html_theme' in globals():
    if html_theme in ['default']:
        # Allow people to bail with a hack of having an html_style
        if not 'html_style' in globals():
            import sphinx_rtd_theme
            html_theme = 'sphinx_rtd_theme'
            html_style = None
            html_theme_options = {}
            if 'html_theme_path' in globals():
                html_theme_path.append(sphinx_rtd_theme.get_html_theme_path())
            else:
                html_theme_path = [sphinx_rtd_theme.get_html_theme_path()]

            using_rtd_theme = True
else:
    import sphinx_rtd_theme
    html_theme = 'sphinx_rtd_theme'
    html_style = None
    html_theme_options = {}
    if 'html_theme_path' in globals():
        html_theme_path.append(sphinx_rtd_theme.get_html_theme_path())
    else:
        html_theme_path = [sphinx_rtd_theme.get_html_theme_path()]
    using_rtd_theme = True

if globals().get('websupport2_base_url', False):
    websupport2_base_url = 'https://readthedocs.com/websupport'
    if 'http' not in settings.MEDIA_URL:
        websupport2_static_url = 'https://media.readthedocs.com/'
    else:
        websupport2_static_url = 'https://media.readthedocs.com/media//static'


#Add project information to the template context.
context = {
    'using_theme': using_rtd_theme,
    'html_theme': html_theme,
    'current_version': "latest",
    'version_slug': "latest",
    'MEDIA_URL': "https://media.readthedocs.com/media/",
    'PRODUCTION_DOMAIN': "readthedocs.com",
    'versions': [
    ("latest", "/en/latest/"),
    ],
    'downloads': [ 
    ("pdf", "//readthedocs.com/projects/cyverse-astrocontainers-workshop-2018/downloads/pdf/latest/"),
    ("htmlzip", "//readthedocs.com/projects/cyverse-astrocontainers-workshop-2018/downloads/htmlzip/latest/"),
    ("epub", "//readthedocs.com/projects/cyverse-astrocontainers-workshop-2018/downloads/epub/latest/"),
    ],
    'subprojects': [ 
    ],
    'slug': 'cyverse-astrocontainers-workshop-2018',
    'name': u'astrocontainers_workshop_2018',
    'rtd_language': u'en',
    'programming_language': u'words',
    'canonical_url': 'https://cyverse-astrocontainers-workshop-2018.readthedocs-hosted.com/en/latest/',
    'analytics_code': '',
    'single_version': False,
    'conf_py_path': '/./',
    'api_host': 'https://readthedocs.com',
    'github_user': 'CyVerse-learning-materials',
    'github_repo': 'astrocontainers_workshop_2018',
    'github_version': 'master',
    'display_github': True,
    'bitbucket_user': 'None',
    'bitbucket_repo': 'None',
    'bitbucket_version': 'master',
    'display_bitbucket': False,
    'gitlab_user': 'None',
    'gitlab_repo': 'None',
    'gitlab_version': 'master',
    'display_gitlab': False,
    'READTHEDOCS': True,
    'using_theme': (html_theme == "default"),
    'new_theme': (html_theme == "sphinx_rtd_theme"),
    'source_suffix': SUFFIX,
    'user_analytics_code': '',
    'global_analytics_code': 'UA-17997319-2',
    
    'commit': '9430898a',
    
}




if 'html_context' in globals():
    html_context.update(context)
else:
    html_context = context

# Add custom RTD extension
if 'extensions' in globals():
    extensions.append("readthedocs_ext.readthedocs")
else:
    extensions = ["readthedocs_ext.readthedocs"]

[rtd-command-info] start-time: 2018-05-04T15:22:22.912319Z, end-time: 2018-05-04T15:22:26.153181Z, duration: 3, exit-code: 0
python sphinx-build -T -E -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html
Running Sphinx v1.6.5
making output directory...
loading translations [en]... done
building [mo]: targets for 0 po files that are out of date
building [readthedocs]: targets for 18 source files that are out of date
updating environment: 18 added, 0 changed, 0 removed
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/home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/docker/dockeradvanced.rst:2: WARNING: Duplicate explicit target name: "docker hub".
looking for now-outdated files... /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/singularity/singularityintro.rst:2: WARNING: Duplicate explicit target name: "singularity".
none found
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/home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/docker/dockeradvanced.rst:458: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
/home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/singularity/singularityintro.rst:104: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
generating indices... genindex
writing additional pages... search
copying images... [  2%] docker/../img/tmpfs.png
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copying static files... WARNING: html_static_path entry u'/home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/_static' does not exist
WARNING: html_static_path entry '/home/docs/checkouts/readthedocs.org/readthedocs/templates/sphinx/_static' does not exist
done
copying readthedocs static files... done
copying searchtools... done
copying extra files... done
dumping search index in English (code: en) ... done
dumping object inventory... done
build succeeded, 6 warnings.

[rtd-command-info] start-time: 2018-05-04T15:22:26.291710Z, end-time: 2018-05-04T15:22:28.379064Z, duration: 2, exit-code: 0
python sphinx-build -T -b json -d _build/doctrees-json -D language=en . _build/json
Running Sphinx v1.6.5
making output directory...
loading translations [en]... done
loading pickled environment... done
building [mo]: targets for 0 po files that are out of date
building [json]: targets for 18 source files that are out of date
updating environment: 0 added, 3 changed, 0 removed
reading sources... [ 33%] docker/dockeradvanced
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reading sources... [100%] singularity/singularityintro

/home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/docker/dockeradvanced.rst:2: WARNING: Duplicate explicit target name: "docker hub".
/home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/singularity/singularityintro.rst:2: WARNING: Duplicate explicit target name: "singularity".
looking for now-outdated files... none found
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writing output... [ 27%] getting_started/about_cyverse
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writing output... [ 38%] getting_started/installation
writing output... [ 44%] getting_started/main
writing output... [ 50%] index
writing output... [ 55%] instructions_reporting/instructors
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writing output... [ 77%] topics/train_docker
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writing output... [100%] useful_resources/usefulresources_singularity

/home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/docker/dockeradvanced.rst:458: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
/home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/singularity/singularityintro.rst:104: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
generating indices... genindex
writing additional pages... search
copying images... [  2%] docker/../img/tmpfs.png
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copying images... [  7%] docker/../img/bind_mount.png
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copying static files... WARNING: html_static_path entry u'/home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/_static' does not exist
WARNING: html_static_path entry '/home/docs/checkouts/readthedocs.org/readthedocs/templates/sphinx/_static' does not exist
done
copying extra files... done
dumping search index in English (code: en) ... done
dumping object inventory... done
build succeeded, 6 warnings.

[rtd-command-info] start-time: 2018-05-04T15:22:28.498289Z, end-time: 2018-05-04T15:22:30.436614Z, duration: 1, exit-code: 0
python sphinx-build -T -b readthedocssinglehtmllocalmedia -d _build/doctrees-readthedocssinglehtmllocalmedia -D language=en . _build/localmedia
Running Sphinx v1.6.5
making output directory...
loading translations [en]... done
loading pickled environment... done
building [mo]: targets for 0 po files that are out of date
building [readthedocssinglehtmllocalmedia]: all documents
updating environment: 0 added, 3 changed, 0 removed
reading sources... [ 33%] docker/dockeradvanced
reading sources... [ 66%] docker/dockerintro
reading sources... [100%] singularity/singularityintro

/home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/docker/dockeradvanced.rst:2: WARNING: Duplicate explicit target name: "docker hub".
/home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/singularity/singularityintro.rst:2: WARNING: Duplicate explicit target name: "singularity".
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
assembling single document... getting_started/main getting_started/installation getting_started/agenda getting_started/about_cyverse topics/train_docker topics/train_singularity atmosphere/boot docker/dockerintro docker/dockeradvanced docker/dockerdemos singularity/singularityintro singularity/singularityadvanced useful_resources/usefulresources_docker useful_resources/usefulresources_singularity useful_resources/usefulresources_other instructions_reporting/instructors instructions_reporting/problems 
writing... /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/index.rst:458: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
/home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/index.rst:104: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
done
writing additional files...
copying images... [  2%] docker/../img/tmpfs.png
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copying static files... WARNING: html_static_path entry u'/home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/_static' does not exist
WARNING: html_static_path entry '/home/docs/checkouts/readthedocs.org/readthedocs/templates/sphinx/_static' does not exist
done
copying readthedocs static files... done
copying extra files... done
dumping object inventory... done
build succeeded, 6 warnings.

[rtd-command-info] start-time: 2018-05-04T15:22:30.568315Z, end-time: 2018-05-04T15:22:32.585973Z, duration: 2, exit-code: 0
python sphinx-build -b latex -D language=en -d _build/doctrees . _build/latex
Running Sphinx v1.6.5
making output directory...
loading translations [en]... done
loading pickled environment... done
building [mo]: targets for 0 po files that are out of date
building [latex]: all documents
updating environment: 0 added, 3 changed, 0 removed
reading sources... [ 33%] docker/dockeradvanced
reading sources... [ 66%] docker/dockerintro
reading sources... [100%] singularity/singularityintro

/home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/docker/dockeradvanced.rst:2: WARNING: Duplicate explicit target name: "docker hub".
/home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/singularity/singularityintro.rst:2: WARNING: Duplicate explicit target name: "singularity".
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
processing CyVerseDocumentation.tex...index getting_started/main getting_started/installation getting_started/agenda getting_started/about_cyverse topics/train_docker topics/train_singularity atmosphere/boot docker/dockerintro docker/dockeradvanced docker/dockerdemos singularity/singularityintro singularity/singularityadvanced useful_resources/usefulresources_docker useful_resources/usefulresources_singularity useful_resources/usefulresources_other instructions_reporting/instructors instructions_reporting/problems 
resolving references...
writing... /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/docker/dockeradvanced.rst:458: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
/home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/singularity/singularityintro.rst:104: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
done
copying images... [  2%] docker/../img/tmpfs.png
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copying images... [ 85%] atmosphere/../img/atmo-7.png
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copying TeX support files...
done
build succeeded, 4 warnings.

[rtd-command-info] start-time: 2018-05-04T15:22:32.663379Z, end-time: 2018-05-04T15:22:43.082422Z, duration: 10, exit-code: 0
pdflatex -interaction=nonstopmode /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/_build/latex/CyVerseDocumentation.tex
This is pdfTeX, Version 3.14159265-2.6-1.40.16 (TeX Live 2015/Debian) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode

(/home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-works
hop-2018/checkouts/latest/_build/latex/CyVerseDocumentation.tex
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Babel <3.9q> and hyphenation patterns for 81 language(s) loaded.
(./sphinxmanual.cls
Document Class: sphinxmanual 2017/03/26 v1.6 Document class (Sphinx manual)
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Document Class: report 2014/09/29 v1.4h Standard LaTeX document class
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For additional information on amsmath, use the `?' option.
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Chapter 1.

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Chapter 2.

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\T1/ptm/m/n/10 We \T1/ptm/b/n/10 strongly rec-om-mend \T1/ptm/m/n/10 Fire-
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[][][]\T1/ptm/m/n/10 Download Cy-Verse Cy-ber-
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Chapter 3.

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\T1/ptm/m/n/10 com-pu-ta-tion re-sources

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[]|\T1/ptm/m/n/10 BYOD/A (Hands-on

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[]|[][]\T1/ptm/m/n/10 Singularity Overview

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Chapter 4.

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Chapter 5.

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Chapter 6.

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Chapter 7.

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Chapter 8.

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l.1198 ...o answer any of these questions yet! ☺
                                                   In this case, the client ...

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 other cloud, you can open
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 ...                                              
                                                  
l.1362 ...your version of Linux/Windows/OSX/OS9 
                                                  — well this is where D...


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l.1362 ...ersion of Linux/Windows/OSX/OS9 — 
                                                  well this is where Docker ...

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l.1449 ...r compose file. And there you have it 
                                                  — a quick and easy way...


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l.1449 ...ose file. And there you have it — 
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l.1498 ...te \sphinxcode{requirements.txt} file 
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Chapter 9.

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Chapter 10.

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Chapter 11.

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Chapter 12.

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Chapter 13.

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Chapter 14.

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Chapter 15.

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Chapter 16.

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[]\T1/pcr/m/n/10 git clone https://github.com/CyVerse-learning-materials/
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Chapter 17.

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Chapter 1.

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Chapter 2.

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Chapter 3.

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Chapter 7.

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Chapter 9.

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Chapter 10.

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Chapter 11.

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Chapter 12.

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Chapter 13.

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Chapter 15.

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Chapter 16.

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[]\T1/pcr/m/n/10 git clone https://github.com/CyVerse-learning-materials/
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Chapter 17.

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(./CyVerseDocumentation.ind) [129] (./CyVerseDocumentation.aux) )
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