Read the Docs build information Build id: 106226 Project: cyverse-astrocontainers-workshop-2018 Version: latest Commit: 3f32d8cbe985d02de25332f0716b58e2fb997b99 Date: 2018-05-04T08:58:57.530991Z State: finished Success: True [rtd-command-info] start-time: 2018-05-04T13:58:58.038741Z, end-time: 2018-05-04T13:58:59.352066Z, duration: 1, exit-code: 0 git clone --recursive https://github.com/CyVerse-learning-materials/astrocontainers_workshop_2018.git . Cloning into '.'... [rtd-command-info] start-time: 2018-05-04T13:58:59.424446Z, end-time: 2018-05-04T13:58:59.489735Z, duration: 0, exit-code: 0 git checkout --force origin/master Note: checking out 'origin/master'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at 3f32d8c... Move data management to introduction; move Dockerfile to advanced [rtd-command-info] start-time: 2018-05-04T13:58:59.577314Z, end-time: 2018-05-04T13:58:59.585448Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2018-05-04T13:58:59.677068Z, end-time: 2018-05-04T13:58:59.683100Z, duration: 0, exit-code: 0 git show-ref --tags [rtd-command-info] start-time: 2018-05-04T13:58:59.749747Z, end-time: 2018-05-04T13:58:59.757904Z, duration: 0, exit-code: 0 git branch -r origin/HEAD -> origin/master origin/master [rtd-command-info] start-time: 2018-05-04T13:59:00.617380Z, end-time: 2018-05-04T13:59:02.236070Z, duration: 1, exit-code: 0 python2.7 -mvirtualenv --no-site-packages --no-download New python executable in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/bin/python2.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/bin/python Installing setuptools, pip, wheel...done. 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https://files.pythonhosted.org/packages/4d/de/32d741db316d8fdb7680822dd37001ef7a448255de9699ab4bfcbdf4172b/MarkupSafe-1.0.tar.gz Building wheels for collected packages: mock, pillow, commonmark, nilsimsa, MarkupSafe Running setup.py bdist_wheel for mock: started Running setup.py bdist_wheel for mock: finished with status 'done' Stored in directory: /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/.cache/pip/wheels/7e/72/92/744b532c779242b57aab4bcba80c312b30c069bbd60025e7e6 Running setup.py bdist_wheel for pillow: started Running setup.py bdist_wheel for pillow: finished with status 'done' Stored in directory: /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/.cache/pip/wheels/de/0e/6b/556798d1ac8762a076ddff5b20f65b2e6cc2ae13b0e683c263 Running setup.py bdist_wheel for commonmark: started Running setup.py bdist_wheel for commonmark: finished with status 'done' Stored in directory: /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/.cache/pip/wheels/a0/f4/35/019d917f6875107ade3aad634c982f5c6b604c5631cddf20ac Running setup.py bdist_wheel for nilsimsa: started Running setup.py bdist_wheel for nilsimsa: finished with status 'done' Stored in directory: /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/.cache/pip/wheels/64/48/61/8d7f0b227d16d55bdad76e3181b6a76eb00bbbd147305da14d Running setup.py bdist_wheel for MarkupSafe: started Running setup.py bdist_wheel for MarkupSafe: finished with status 'done' Stored in directory: /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/.cache/pip/wheels/33/56/20/ebe49a5c612fffe1c5a632146b16596f9e64676768661e4e46 Successfully built mock pillow commonmark nilsimsa MarkupSafe Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, commonmark, recommonmark, sphinxcontrib-websupport, six, urllib3, idna, chardet, certifi, requests, typing, imagesize, pytz, babel, snowballstemmer, MarkupSafe, Jinja2, sphinx, sphinx-rtd-theme, nilsimsa, readthedocs-sphinx-ext Found existing installation: setuptools 28.8.0 Uninstalling setuptools-28.8.0: Successfully uninstalled setuptools-28.8.0 Successfully installed Jinja2-2.10 MarkupSafe-1.0 Pygments-2.2.0 alabaster-0.7.10 babel-2.5.3 certifi-2018.4.16 chardet-3.0.4 commonmark-0.5.4 docutils-0.13.1 idna-2.6 imagesize-1.0.0 mock-1.0.1 nilsimsa-0.3.8 pillow-2.6.1 pytz-2018.4 readthedocs-sphinx-ext-0.5.10 recommonmark-0.4.0 requests-2.18.4 setuptools-39.1.0 six-1.11.0 snowballstemmer-1.2.1 sphinx-1.6.5 sphinx-rtd-theme-0.2.4 sphinxcontrib-websupport-1.0.1 typing-3.6.4 urllib3-1.22 You are using pip version 9.0.1, however version 10.0.1 is available. You should consider upgrading via the 'pip install --upgrade pip' command. 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/home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt (line 2)) Collecting sphinxcontrib-images (from -r /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt (line 3)) Downloading https://files.pythonhosted.org/packages/07/47/3959ecf843fa30ae06346ff340bfd4e29ae4c46a0bac049bf0bd525d8b1a/sphinxcontrib_images-0.7.0-py2-none-any.whl (65kB) Collecting sphinx_bootstrap_theme (from -r /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt (line 4)) Downloading https://files.pythonhosted.org/packages/8a/f6/e7dbc28e448817d2b103c57a3e4ee52f8edc143beab9595ced31e4789749/sphinx-bootstrap-theme-0.6.5.tar.gz (1.2MB) Collecting guzzle_sphinx_theme==0.7.11 (from -r /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt (line 5)) Downloading 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/home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt (line 1)) Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from sphinx->-r /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt (line 1)) Requirement already satisfied: imagesize in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from sphinx->-r /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt (line 1)) Requirement already satisfied: babel!=2.0,>=1.3 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from sphinx->-r 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/home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from babel!=2.0,>=1.3->sphinx->-r /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt (line 1)) Requirement already satisfied: MarkupSafe>=0.23 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/envs/latest/lib/python2.7/site-packages (from Jinja2>=2.3->sphinx->-r /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/requirements.txt (line 1)) Building wheels for collected packages: sphinx-bootstrap-theme, guzzle-sphinx-theme Running setup.py bdist_wheel for sphinx-bootstrap-theme: started Running setup.py bdist_wheel for sphinx-bootstrap-theme: finished with status 'done' Stored in directory: /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/.cache/pip/wheels/01/3c/98/f37c5ef813bb7262c17c566da10f9f7e4f6ff4b897d0a4209c Running setup.py bdist_wheel for guzzle-sphinx-theme: started Running setup.py bdist_wheel for guzzle-sphinx-theme: finished with status 'done' Stored in directory: /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/.cache/pip/wheels/6e/68/e9/4626607977db13794bfaf48afab2cf05487bb4d3612c09dcee Successfully built sphinx-bootstrap-theme guzzle-sphinx-theme Installing collected packages: sphinxcontrib-images, sphinx-bootstrap-theme, guzzle-sphinx-theme Successfully installed guzzle-sphinx-theme-0.7.11 sphinx-bootstrap-theme-0.6.5 sphinxcontrib-images-0.7.0 You are using pip version 9.0.1, however version 10.0.1 is available. You should consider upgrading via the 'pip install --upgrade pip' command. [rtd-command-info] start-time: 2018-05-04T13:59:29.809498Z, end-time: 2018-05-04T13:59:29.873512Z, duration: 0, exit-code: 0 cat conf.py #!/usr/bin/env python3 # -*- coding: utf-8 -*- # # General information about the project. import sys import os sys.path.insert(0, os.path.dirname(__file__)) from misc.cyverse_sphinx_conf import * # noqa project = 'CyVerse AstroContainers Workshop: Learning Docker and Singularity' copyright = '2018, CyVerse' author = 'CyVerse' version = '0.1.0' release = '0.1.0' epub_title = project epub_author = author epub_publisher = author epub_copyright = copyright ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # import sys import os.path from six import string_types from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix else: SUFFIX = source_suffix[0] else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') html_static_path.append('/home/docs/checkouts/readthedocs.org/readthedocs/templates/sphinx/_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = False if 'html_theme' in globals(): if html_theme in ['default']: # Allow people to bail with a hack of having an html_style if not 'html_style' in globals(): import sphinx_rtd_theme html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(sphinx_rtd_theme.get_html_theme_path()) else: html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] using_rtd_theme = True else: import sphinx_rtd_theme html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(sphinx_rtd_theme.get_html_theme_path()) else: html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] using_rtd_theme = True if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.com/websupport' if 'http' not in settings.MEDIA_URL: websupport2_static_url = 'https://media.readthedocs.com/' else: websupport2_static_url = 'https://media.readthedocs.com/media//static' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "latest", 'version_slug': "latest", 'MEDIA_URL': "https://media.readthedocs.com/media/", 'PRODUCTION_DOMAIN': "readthedocs.com", 'versions': [ ("latest", "/en/latest/"), ], 'downloads': [ ("pdf", "//readthedocs.com/projects/cyverse-astrocontainers-workshop-2018/downloads/pdf/latest/"), ("htmlzip", "//readthedocs.com/projects/cyverse-astrocontainers-workshop-2018/downloads/htmlzip/latest/"), ("epub", "//readthedocs.com/projects/cyverse-astrocontainers-workshop-2018/downloads/epub/latest/"), ], 'subprojects': [ ], 'slug': 'cyverse-astrocontainers-workshop-2018', 'name': u'astrocontainers_workshop_2018', 'rtd_language': u'en', 'programming_language': u'words', 'canonical_url': 'https://cyverse-astrocontainers-workshop-2018.readthedocs-hosted.com/en/latest/', 'analytics_code': '', 'single_version': False, 'conf_py_path': '/./', 'api_host': 'https://readthedocs.com', 'github_user': 'CyVerse-learning-materials', 'github_repo': 'astrocontainers_workshop_2018', 'github_version': 'master', 'display_github': True, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'master', 'display_bitbucket': False, 'gitlab_user': 'None', 'gitlab_repo': 'None', 'gitlab_version': 'master', 'display_gitlab': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'user_analytics_code': '', 'global_analytics_code': 'UA-17997319-2', 'commit': '3f32d8cb', } if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): extensions.append("readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] [rtd-command-info] start-time: 2018-05-04T13:59:29.939902Z, end-time: 2018-05-04T13:59:33.114573Z, duration: 3, exit-code: 0 python sphinx-build -T -E -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html Running Sphinx v1.6.5 making output directory... loading translations [en]... done building [mo]: targets for 0 po files that are out of date building [readthedocs]: targets for 18 source files that are out of date updating environment: 18 added, 0 changed, 0 removed reading sources... 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[rtd-command-info] start-time: 2018-05-04T13:59:33.217173Z, end-time: 2018-05-04T13:59:35.596706Z, duration: 2, exit-code: 0 python sphinx-build -T -b json -d _build/doctrees-json -D language=en . _build/json Running Sphinx v1.6.5 making output directory... loading translations [en]... done loading pickled environment... not yet created building [mo]: targets for 0 po files that are out of date building [json]: targets for 18 source files that are out of date updating environment: 18 added, 0 changed, 0 removed reading sources... [ 5%] atmosphere/boot reading sources... [ 11%] docker/dockeradvanced reading sources... [ 16%] docker/dockerdemos reading sources... [ 22%] docker/dockerintro reading sources... [ 27%] getting_started/about_cyverse reading sources... [ 33%] getting_started/agenda reading sources... [ 38%] getting_started/installation reading sources... [ 44%] getting_started/main reading sources... [ 50%] index reading sources... 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[rtd-command-info] start-time: 2018-05-04T13:59:35.695494Z, end-time: 2018-05-04T13:59:37.952798Z, duration: 2, exit-code: 0 python sphinx-build -T -b readthedocssinglehtmllocalmedia -d _build/doctrees-readthedocssinglehtmllocalmedia -D language=en . _build/localmedia Running Sphinx v1.6.5 making output directory... loading translations [en]... done loading pickled environment... not yet created building [mo]: targets for 0 po files that are out of date building [readthedocssinglehtmllocalmedia]: all documents updating environment: 18 added, 0 changed, 0 removed reading sources... [ 5%] atmosphere/boot reading sources... [ 11%] docker/dockeradvanced reading sources... [ 16%] docker/dockerdemos reading sources... [ 22%] docker/dockerintro reading sources... [ 27%] getting_started/about_cyverse reading sources... [ 33%] getting_started/agenda reading sources... [ 38%] getting_started/installation reading sources... [ 44%] getting_started/main reading sources... 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See the inputenc package documentation for explanation. Type H for immediate help. ... l.2616 ...\sphinxcode{app.py} inside the folder  — \sphinxcode{scikit\_do... [82] [83] [84] Chapter 10. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `\sphinxstylestrong' on input line 2757. Overfull \hbox (94.81851pt too wide) in paragraph at lines 2795--2796 [][] [85] [86 <./portainer_demo.png>] Overfull \hbox (94.82858pt too wide) in paragraph at lines 2811--2812 [][] [87 <./pwd.png>] [88] Chapter 11. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `\sphinxstylestrong' on input line 2814. [89 <./singularity.png>] Overfull \hbox (800.25983pt too wide) in paragraph at lines 2858--2859 [][] [90 <./singularity-2.4-flow.png>] [91] [92] [93] [94] [95] Overfull \vbox (7.8273pt too high) detected at line 3240 [96] [97] [98] [99] [100] [101] [102] [103] [104] Chapter 12. 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Underfull \hbox (badness 10000) in paragraph at lines 1--4003 []\T1/pcr/m/n/10 git clone https://github.com/CyVerse-learning-materials/ [117] Overfull \hbox (94.82553pt too wide) in paragraph at lines 4049--4050 [][] [118] [119 <./static_site_docker2.png>] [120] Chapter 17. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `\sphinxstylestrong' on input line 4062. No file CyVerseDocumentation.ind. [121] (./CyVerseDocumentation.aux) Package rerunfilecheck Warning: File `CyVerseDocumentation.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on CyVerseDocumentation.pdf (125 pages, 4956187 bytes). Transcript written on CyVerseDocumentation.log. [rtd-command-info] start-time: 2018-05-04T13:59:50.234767Z, end-time: 2018-05-04T13:59:50.362302Z, duration: 0, exit-code: 0 makeindex -s python.ist CyVerseDocumentation.idx This is makeindex, version 2.15 [TeX Live 2015] (kpathsea + Thai support). Scanning style file ./python.ist.......done (7 attributes redefined, 0 ignored). Scanning input file CyVerseDocumentation.idx...done (0 entries accepted, 0 rejected). Nothing written in CyVerseDocumentation.ind. Transcript written in CyVerseDocumentation.ilg. [rtd-command-info] start-time: 2018-05-04T13:59:50.423295Z, end-time: 2018-05-04T14:00:00.095658Z, duration: 9, exit-code: 0 pdflatex -interaction=nonstopmode /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/_build/latex/CyVerseDocumentation.tex This is pdfTeX, Version 3.14159265-2.6-1.40.16 (TeX Live 2015/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (/home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-works hop-2018/checkouts/latest/_build/latex/CyVerseDocumentation.tex LaTeX2e <2016/02/01> Babel <3.9q> and hyphenation patterns for 81 language(s) loaded. 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Package inputenc Error: Unicode char   (U+200A) (inputenc) not set up for use with LaTeX. See the inputenc package documentation for explanation. Type H for immediate help. ... l.2468 ...your version of Linux/Windows/OSX/OS9  — well this is where D... ! Package inputenc Error: Unicode char   (U+200A) (inputenc) not set up for use with LaTeX. See the inputenc package documentation for explanation. Type H for immediate help. ... l.2468 ...ersion of Linux/Windows/OSX/OS9 —  well this is where Docker ... [71] Overfull \hbox (94.84572pt too wide) in paragraph at lines 2504--2505 [][] [72] Overfull \vbox (19.54147pt too high) detected at line 2529 [73 <./jn_ss.png>] Overfull \hbox (94.84164pt too wide) in paragraph at lines 2543--2544 [][] [74] Overfull \hbox (94.86247pt too wide) in paragraph at lines 2547--2548 [][] [75 <./jn_login.png>] Overfull \hbox (94.84811pt too wide) in paragraph at lines 2551--2552 [][] [76 <./jn_login2.png>] Overfull \hbox (94.84811pt too wide) in paragraph at lines 2553--2554 [][] [77 <./jn_login3.png>] ! Package inputenc Error: Unicode char   (U+200A) (inputenc) not set up for use with LaTeX. See the inputenc package documentation for explanation. Type H for immediate help. ... l.2555 ...r compose file. And there you have it  — a quick and easy way... ! Package inputenc Error: Unicode char   (U+200A) (inputenc) not set up for use with LaTeX. See the inputenc package documentation for explanation. Type H for immediate help. ... l.2555 ...ose file. And there you have it —  a quick and easy way to st... Overfull \hbox (94.8493pt too wide) in paragraph at lines 2565--2566 [][] [78 <./jn_login3.5.png>] Overfull \hbox (94.82553pt too wide) in paragraph at lines 2577--2578 [][] [79 <./rstudio_ss.png>] Overfull \hbox (94.82121pt too wide) in paragraph at lines 2581--2582 [][] [80 <./rstudio_login2.png>] ! Package inputenc Error: Unicode char   (U+200A) (inputenc) not set up for use with LaTeX. See the inputenc package documentation for explanation. Type H for immediate help. ... l.2604 ...te \sphinxcode{requirements.txt} file  — Contains python modu... ! Package inputenc Error: Unicode char   (U+200A) (inputenc) not set up for use with LaTeX. See the inputenc package documentation for explanation. Type H for immediate help. ... l.2604 ...hinxcode{requirements.txt} file —  Contains python modules an... [81 <./rstudio_login.png>] ! Package inputenc Error: Unicode char   (U+200A) (inputenc) not set up for use with LaTeX. See the inputenc package documentation for explanation. Type H for immediate help. ... l.2616 ...\sphinxcode{app.py} inside the folder  — \sphinxcode{scikit\_do... [82] [83] [84] Chapter 10. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `\sphinxstylestrong' on input line 2757. Overfull \hbox (94.81851pt too wide) in paragraph at lines 2795--2796 [][] [85] [86 <./portainer_demo.png>] Overfull \hbox (94.82858pt too wide) in paragraph at lines 2811--2812 [][] [87 <./pwd.png>] [88] Chapter 11. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `\sphinxstylestrong' on input line 2814. [89 <./singularity.png>] Overfull \hbox (800.25983pt too wide) in paragraph at lines 2858--2859 [][] [90 <./singularity-2.4-flow.png>] [91] [92] [93] [94] [95] Overfull \vbox (7.8273pt too high) detected at line 3240 [96] [97] [98] [99] [100] [101] [102] [103] [104] Chapter 12. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `\sphinxstylestrong' on input line 3674. [105] [106] [107] [108] [109] [110] Chapter 13. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `\sphinxstylestrong' on input line 3870. [111] [112] Chapter 14. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `\sphinxstylestrong' on input line 3913. [113] [114] Chapter 15. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `\sphinxstylestrong' on input line 3933. [115] [116] Chapter 16. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `\sphinxstylestrong' on input line 3955. Underfull \hbox (badness 10000) in paragraph at lines 1--4003 []\T1/pcr/m/n/10 git clone https://github.com/CyVerse-learning-materials/ [117] Overfull \hbox (94.82553pt too wide) in paragraph at lines 4049--4050 [][] [118] [119 <./static_site_docker2.png>] [120] Chapter 17. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `\sphinxstylestrong' on input line 4062. (./CyVerseDocumentation.ind) [121] (./CyVerseDocumentation.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on CyVerseDocumentation.pdf (125 pages, 4957629 bytes). Transcript written on CyVerseDocumentation.log. [rtd-command-info] start-time: 2018-05-04T14:00:00.225803Z, end-time: 2018-05-04T14:00:00.300348Z, duration: 0, exit-code: 0 mv -f /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/checkouts/latest/_build/latex/CyVerseDocumentation.pdf /home/docs/checkouts/readthedocs.org/user_builds/cyverse-astrocontainers-workshop-2018/artifacts/latest/sphinx_pdf/cyverse-astrocontainers-workshop-2018.pdf [rtd-command-info] start-time: 2018-05-04T14:00:00.375325Z, end-time: 2018-05-04T14:00:03.253939Z, duration: 2, exit-code: 0 python sphinx-build -T -b epub -d _build/doctrees-epub -D language=en . _build/epub Running Sphinx v1.6.5 making output directory... loading translations [en]... done loading pickled environment... not yet created building [mo]: targets for 0 po files that are out of date building [epub]: targets for 18 source files that are out of date updating environment: 18 added, 0 changed, 0 removed reading sources... 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