Read the Docs build information Build id: 1037628 Project: institute-for-disease-modeling-emod-api Version: latest Commit: dd36449157904904a6a5ad3cd9c79fe7b6e5de0f Date: 2022-08-02T20:36:52.369247Z State: finished Success: True [rtd-command-info] start-time: 2022-08-02T20:36:54.336700Z, end-time: 2022-08-02T20:36:56.186016Z, duration: 1, exit-code: 0 git clone --no-single-branch --depth 50 git@github.com:InstituteforDiseaseModeling/emod-api.git . Cloning into '.'... Warning: Permanently added 'github.com,192.30.255.113' (ECDSA) to the list of known hosts. [rtd-command-info] start-time: 2022-08-02T20:36:56.385351Z, end-time: 2022-08-02T20:36:56.622378Z, duration: 0, exit-code: 0 git checkout --force origin/master Note: switching to 'origin/master'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at dd36449 Add a test for OneWayMigration - with multiple nodes (#556) [rtd-command-info] start-time: 2022-08-02T20:36:56.829414Z, end-time: 2022-08-02T20:36:56.890163Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2022-08-02T20:36:58.023973Z, end-time: 2022-08-02T20:37:04.314777Z, duration: 6, exit-code: 0 python3.7 -mvirtualenv --system-site-packages Using base prefix '/home/docs/.pyenv/versions/3.7.9' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2022-08-02T20:37:04.518992Z, end-time: 2022-08-02T20:37:06.459407Z, duration: 1, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip setuptools<58.3.0 Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (22.2.1) Collecting setuptools<58.3.0 Downloading setuptools-58.2.0-py3-none-any.whl (946 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 946.1/946.1 kB 26.9 MB/s eta 0:00:00 Installing collected packages: setuptools Attempting uninstall: setuptools Found existing installation: setuptools 63.3.0 Uninstalling setuptools-63.3.0: Successfully uninstalled setuptools-63.3.0 Successfully installed setuptools-58.2.0 [rtd-command-info] start-time: 2022-08-02T20:37:06.649636Z, end-time: 2022-08-02T20:37:15.771317Z, duration: 9, exit-code: 0 python -m pip install --upgrade --no-cache-dir -I mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<2.2 jinja2<3.1.0 setuptools<58.3.0 Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Collecting mock==1.0.1 Downloading mock-1.0.1.zip (861 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 861.9/861.9 kB 22.2 MB/s eta 0:00:00 Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.0/2.0 MB 120.2 MB/s eta 0:00:00 Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 47.4/47.4 kB 176.4 MB/s eta 0:00:00 Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.6-py2.py3-none-any.whl (3.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.1/3.1 MB 177.3 MB/s eta 0:00:00 Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 6.4/6.4 MB 166.9 MB/s eta 0:00:00 Collecting readthedocs-sphinx-ext<2.2 Downloading readthedocs_sphinx_ext-2.1.8-py2.py3-none-any.whl (11 kB) Collecting jinja2<3.1.0 Downloading Jinja2-3.0.3-py3-none-any.whl (133 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 133.6/133.6 kB 214.1 MB/s eta 0:00:00 Collecting setuptools<58.3.0 Downloading setuptools-58.2.0-py3-none-any.whl (946 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 946.1/946.1 kB 236.0 MB/s eta 0:00:00 Collecting future Downloading future-0.18.2.tar.gz (829 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 829.2/829.2 kB 213.1 MB/s eta 0:00:00 Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting docutils>=0.11 Downloading docutils-0.19-py3-none-any.whl (570 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 570.5/570.5 kB 240.5 MB/s eta 0:00:00 Collecting babel!=2.0,>=1.3 Downloading Babel-2.10.3-py3-none-any.whl (9.5 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 9.5/9.5 MB 179.7 MB/s eta 0:00:00 Collecting requests>=2.0.0 Downloading requests-2.28.1-py3-none-any.whl (62 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 62.8/62.8 kB 187.6 MB/s eta 0:00:00 Collecting imagesize Downloading imagesize-1.4.1-py2.py3-none-any.whl (8.8 kB) Collecting packaging Downloading packaging-21.3-py3-none-any.whl (40 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 40.8/40.8 kB 172.2 MB/s eta 0:00:00 Collecting docutils>=0.11 Downloading docutils-0.17.1-py2.py3-none-any.whl (575 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 575.5/575.5 kB 245.7 MB/s eta 0:00:00 Collecting Pygments>=2.0 Downloading Pygments-2.12.0-py3-none-any.whl (1.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.1/1.1 MB 191.2 MB/s eta 0:00:00 Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.4-py2.py3-none-any.whl (39 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.2.0-py2.py3-none-any.whl (93 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 93.0/93.0 kB 204.3 MB/s eta 0:00:00 Collecting six>=1.5 Downloading six-1.16.0-py2.py3-none-any.whl (11 kB) Collecting MarkupSafe>=2.0 Downloading MarkupSafe-2.1.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB) Collecting pytz>=2015.7 Downloading pytz-2022.1-py2.py3-none-any.whl (503 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 503.5/503.5 kB 236.7 MB/s eta 0:00:00 Collecting idna<4,>=2.5 Downloading idna-3.3-py3-none-any.whl (61 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 61.2/61.2 kB 199.5 MB/s eta 0:00:00 Collecting certifi>=2017.4.17 Downloading certifi-2022.6.15-py3-none-any.whl (160 kB) 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sha256=f44d8bea0e025c0c96a0b715dc34b637dc30dab2ad05b1e80ccd94631795bc48 Stored in directory: /tmp/pip-ephem-wheel-cache-cu6kb20_/wheels/7a/94/b1/0fdc5339a5bd487a5cc15421ec200d9ba3e2aa7190e4a727f1 Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491070 sha256=c4ef1c23767f30b4e01f181498f641323667c811d19d9071943daa7ec20be654 Stored in directory: /tmp/pip-ephem-wheel-cache-cu6kb20_/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: snowballstemmer, pytz, mock, alabaster, urllib3, sphinxcontrib-serializinghtml, six, setuptools, pyparsing, Pygments, pillow, MarkupSafe, imagesize, idna, future, docutils, charset-normalizer, certifi, babel, sphinxcontrib-websupport, requests, packaging, jinja2, commonmark, sphinx, readthedocs-sphinx-ext, sphinx-rtd-theme, recommonmark ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts. matplotlib 3.3.2 requires pillow>=6.2.0, but you have pillow 5.4.1 which is incompatible. Successfully installed MarkupSafe-2.1.1 Pygments-2.12.0 alabaster-0.7.12 babel-2.10.3 certifi-2022.6.15 charset-normalizer-2.1.0 commonmark-0.8.1 docutils-0.17.1 future-0.18.2 idna-3.3 imagesize-1.4.1 jinja2-3.0.3 mock-1.0.1 packaging-21.3 pillow-5.4.1 pyparsing-3.0.9 pytz-2022.1 readthedocs-sphinx-ext-2.1.8 recommonmark-0.5.0 requests-2.28.1 setuptools-58.2.0 six-1.16.0 snowballstemmer-2.2.0 sphinx-1.8.6 sphinx-rtd-theme-0.4.3 sphinxcontrib-serializinghtml-1.1.5 sphinxcontrib-websupport-1.2.4 urllib3-1.26.11 [rtd-command-info] start-time: 2022-08-02T20:37:16.023683Z, end-time: 2022-08-02T20:37:22.636544Z, duration: 6, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Requirement already satisfied: numpy!=1.19.4 in /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages (from -r requirements.txt (line 1)) (1.19.2) Collecting pyyaml Downloading PyYAML-6.0-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (596 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 596.3/596.3 kB 23.8 MB/s eta 0:00:00 Requirement already satisfied: pandas in /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages (from -r requirements.txt (line 3)) (1.1.3) Requirement already satisfied: scipy in /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages (from -r requirements.txt (line 4)) (1.5.3) Collecting shapely Downloading Shapely-1.8.2-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (2.0 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.0/2.0 MB 172.6 MB/s eta 0:00:00 Collecting pyproj Downloading pyproj-3.2.1-cp37-cp37m-manylinux2010_x86_64.whl (6.3 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 6.3/6.3 MB 177.7 MB/s eta 0:00:00 Collecting geographiclib Downloading geographiclib-2.0-py3-none-any.whl (40 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 40.3/40.3 kB 178.8 MB/s eta 0:00:00 Collecting sklearn Downloading sklearn-0.0.tar.gz (1.1 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting lz4 Downloading lz4-4.0.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (1.2 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.2/1.2 MB 243.9 MB/s eta 0:00:00 Collecting prodict Downloading prodict-0.8.18.tar.gz (4.2 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting graphviz Downloading graphviz-0.20.1-py3-none-any.whl (47 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 47.0/47.0 kB 167.6 MB/s eta 0:00:00 Collecting parse Downloading parse-1.19.0.tar.gz (30 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Requirement already satisfied: python-dateutil>=2.7.3 in /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages (from pandas->-r requirements.txt (line 3)) (2.8.1) Requirement already satisfied: pytz>=2017.2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from pandas->-r requirements.txt (line 3)) (2022.1) Requirement already satisfied: certifi in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from pyproj->-r requirements.txt (line 6)) (2022.6.15) Collecting scikit-learn Downloading scikit_learn-1.0.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (24.8 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 24.8/24.8 MB 187.5 MB/s eta 0:00:00 Requirement already satisfied: six>=1.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from python-dateutil>=2.7.3->pandas->-r requirements.txt (line 3)) (1.16.0) Collecting joblib>=0.11 Downloading joblib-1.1.0-py2.py3-none-any.whl (306 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 307.0/307.0 kB 230.0 MB/s eta 0:00:00 Collecting threadpoolctl>=2.0.0 Downloading threadpoolctl-3.1.0-py3-none-any.whl (14 kB) Building wheels for collected packages: sklearn, prodict, parse Building wheel for sklearn (setup.py): started Building wheel for sklearn (setup.py): finished with status 'done' Created wheel for sklearn: filename=sklearn-0.0-py2.py3-none-any.whl size=1310 sha256=3813685fdd278bedea624f54e6a8c72dad0c9c8e07cfa8648ec6ae67caefadef Stored in directory: /tmp/pip-ephem-wheel-cache-1xq6jhrz/wheels/46/ef/c3/157e41f5ee1372d1be90b09f74f82b10e391eaacca8f22d33e Building wheel for prodict (setup.py): started Building wheel for prodict (setup.py): finished with status 'done' Created wheel for prodict: filename=prodict-0.8.18-py3-none-any.whl size=4223 sha256=c3c4b2812b3406ecd79dad8416fc386235a1998325dfae38b3d1629555228b6b Stored in directory: /tmp/pip-ephem-wheel-cache-1xq6jhrz/wheels/a8/e6/67/cda708a2cd06853a75a33ecab7ade9eda84e962a7635406c70 Building wheel for parse (setup.py): started Building wheel for parse (setup.py): finished with status 'done' Created wheel for parse: filename=parse-1.19.0-py3-none-any.whl size=24591 sha256=1a4c39eca0b8051145b9da27679ba63249dc27ca328c71ee4fc87e813c9853d5 Stored in directory: /tmp/pip-ephem-wheel-cache-1xq6jhrz/wheels/9c/aa/cc/f2228050ccb40f22144b073f15a2c84f11204f29fc0dce028e Successfully built sklearn prodict parse Installing collected packages: prodict, parse, threadpoolctl, shapely, pyyaml, pyproj, lz4, joblib, graphviz, geographiclib, scikit-learn, sklearn Successfully installed geographiclib-2.0 graphviz-0.20.1 joblib-1.1.0 lz4-4.0.2 parse-1.19.0 prodict-0.8.18 pyproj-3.2.1 pyyaml-6.0 scikit-learn-1.0.2 shapely-1.8.2 sklearn-0.0 threadpoolctl-3.1.0 [rtd-command-info] start-time: 2022-08-02T20:37:22.834685Z, end-time: 2022-08-02T20:37:27.493965Z, duration: 4, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r docs/requirements.txt Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Collecting sphinx-rtd-theme~=0.5.0 Downloading sphinx_rtd_theme-0.5.2-py2.py3-none-any.whl (9.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 9.1/9.1 MB 118.2 MB/s eta 0:00:00 Collecting sphinxcontrib-napoleon~=0.7 Downloading sphinxcontrib_napoleon-0.7-py2.py3-none-any.whl (17 kB) Collecting sphinx~=4.4.0 Downloading Sphinx-4.4.0-py3-none-any.whl (3.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.1/3.1 MB 199.2 MB/s eta 0:00:00 Collecting plantweb~=1.2.1 Downloading plantweb-1.2.1-py3-none-any.whl (20 kB) Collecting sphinxcontrib-programoutput~=0.16 Downloading sphinxcontrib_programoutput-0.17-py2.py3-none-any.whl (22 kB) Collecting sphinxext.remoteliteralinclude Downloading sphinxext_remoteliteralinclude-0.4.0-py3-none-any.whl (6.4 kB) Collecting sphinx-copybutton~=0.4.0 Downloading sphinx_copybutton-0.4.0-py3-none-any.whl (12 kB) Collecting docutils<0.17 Downloading docutils-0.16-py2.py3-none-any.whl (548 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 548.2/548.2 kB 232.1 MB/s eta 0:00:00 Collecting pockets>=0.3 Downloading pockets-0.9.1-py2.py3-none-any.whl (26 kB) Requirement already satisfied: six>=1.5.2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinxcontrib-napoleon~=0.7->-r docs/requirements.txt (line 2)) (1.16.0) Collecting sphinxcontrib-applehelp Downloading sphinxcontrib_applehelp-1.0.2-py2.py3-none-any.whl (121 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 121.2/121.2 kB 213.0 MB/s eta 0:00:00 Collecting sphinxcontrib-jsmath Downloading sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl (5.1 kB) Collecting sphinxcontrib-htmlhelp>=2.0.0 Downloading sphinxcontrib_htmlhelp-2.0.0-py2.py3-none-any.whl (100 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100.5/100.5 kB 204.7 MB/s eta 0:00:00 Collecting sphinxcontrib-qthelp Downloading sphinxcontrib_qthelp-1.0.3-py2.py3-none-any.whl (90 kB) 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sphinx~=4.4.0->-r docs/requirements.txt (line 3)) (0.7.12) Requirement already satisfied: imagesize in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinx~=4.4.0->-r docs/requirements.txt (line 3)) (1.4.1) Requirement already satisfied: packaging in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinx~=4.4.0->-r docs/requirements.txt (line 3)) (21.3) Collecting importlib-metadata>=4.4 Downloading importlib_metadata-4.12.0-py3-none-any.whl (21 kB) Collecting sphinxcontrib-devhelp Downloading sphinxcontrib_devhelp-1.0.2-py2.py3-none-any.whl (84 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 84.7/84.7 kB 206.6 MB/s eta 0:00:00 Requirement already satisfied: sphinxcontrib-serializinghtml>=1.1.5 in 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Requirement already satisfied: pytz>=2015.7 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from babel>=1.3->sphinx~=4.4.0->-r docs/requirements.txt (line 3)) (2022.1) Collecting typing-extensions>=3.6.4 Downloading typing_extensions-4.3.0-py3-none-any.whl (25 kB) Collecting zipp>=0.5 Downloading zipp-3.8.1-py3-none-any.whl (5.6 kB) Requirement already satisfied: urllib3<1.27,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from requests>=2.5.0->sphinx~=4.4.0->-r docs/requirements.txt (line 3)) (1.26.11) Requirement already satisfied: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from requests>=2.5.0->sphinx~=4.4.0->-r docs/requirements.txt (line 3)) (2022.6.15) Requirement already satisfied: idna<4,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from requests>=2.5.0->sphinx~=4.4.0->-r docs/requirements.txt (line 3)) (3.3) Requirement already satisfied: charset-normalizer<3,>=2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from requests>=2.5.0->sphinx~=4.4.0->-r docs/requirements.txt (line 3)) (2.1.0) Requirement already satisfied: pyparsing!=3.0.5,>=2.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from packaging->sphinx~=4.4.0->-r docs/requirements.txt (line 3)) (3.0.9) Installing collected packages: zipp, typing-extensions, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, pockets, MarkupSafe, docutils, sphinxcontrib-napoleon, plantweb, Jinja2, importlib-metadata, sphinxext.remoteliteralinclude, sphinx, sphinxcontrib-programoutput, sphinx-rtd-theme, sphinx-copybutton Attempting uninstall: MarkupSafe Found existing installation: MarkupSafe 2.1.1 Uninstalling MarkupSafe-2.1.1: Successfully uninstalled MarkupSafe-2.1.1 Attempting uninstall: docutils Found existing installation: docutils 0.17.1 Uninstalling docutils-0.17.1: Successfully uninstalled docutils-0.17.1 Attempting uninstall: Jinja2 Found existing installation: Jinja2 3.0.3 Uninstalling Jinja2-3.0.3: Successfully uninstalled Jinja2-3.0.3 Attempting uninstall: sphinx Found existing installation: Sphinx 1.8.6 Uninstalling Sphinx-1.8.6: Successfully uninstalled Sphinx-1.8.6 Attempting uninstall: sphinx-rtd-theme Found existing installation: sphinx-rtd-theme 0.4.3 Uninstalling sphinx-rtd-theme-0.4.3: Successfully uninstalled sphinx-rtd-theme-0.4.3 Successfully installed Jinja2-2.11.3 MarkupSafe-2.0.1 docutils-0.16 importlib-metadata-4.12.0 plantweb-1.2.1 pockets-0.9.1 sphinx-4.4.0 sphinx-copybutton-0.4.0 sphinx-rtd-theme-0.5.2 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-devhelp-1.0.2 sphinxcontrib-htmlhelp-2.0.0 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-napoleon-0.7 sphinxcontrib-programoutput-0.17 sphinxcontrib-qthelp-1.0.3 sphinxext.remoteliteralinclude-0.4.0 typing-extensions-4.3.0 zipp-3.8.1 [rtd-command-info] start-time: 2022-08-02T20:37:27.812801Z, end-time: 2022-08-02T20:37:28.806881Z, duration: 0, exit-code: 0 python ./setup.py install --force running install running bdist_egg running egg_info creating emod_api.egg-info writing emod_api.egg-info/PKG-INFO writing dependency_links to emod_api.egg-info/dependency_links.txt writing requirements to emod_api.egg-info/requires.txt writing top-level names to emod_api.egg-info/top_level.txt writing manifest file 'emod_api.egg-info/SOURCES.txt' reading manifest file 'emod_api.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'emod_api/tests/data/*' warning: no directories found matching 'emod_api/dtk_tools/serialization/test-data/*' adding license file 'LICENSE' writing manifest file 'emod_api.egg-info/SOURCES.txt' installing library code to build/bdist.linux-x86_64/egg running install_lib running build_py creating build creating build/lib creating build/lib/examples copying examples/some_config_i_found.py -> build/lib/examples copying examples/write_config_from_default_and_params.py -> build/lib/examples copying examples/serialized_file_mc_to_sc.py -> build/lib/examples copying examples/intervention_from_schema.py -> build/lib/examples copying examples/spatial_report.py -> build/lib/examples copying examples/migration.py -> build/lib/examples copying examples/weather_file.py -> build/lib/examples copying examples/__init__.py -> build/lib/examples copying examples/insetchart.py -> build/lib/examples copying examples/default_from_schema.py -> build/lib/examples creating build/lib/emod_api copying emod_api/__main__.py -> build/lib/emod_api copying emod_api/peek_camp.py -> build/lib/emod_api copying emod_api/campaign.py -> build/lib/emod_api copying emod_api/__init__.py -> build/lib/emod_api copying emod_api/schema_to_class.py -> build/lib/emod_api creating build/lib/emod_api/weather copying emod_api/weather/weather.py -> build/lib/emod_api/weather copying emod_api/weather/__main__.py -> build/lib/emod_api/weather copying emod_api/weather/__init__.py -> build/lib/emod_api/weather creating build/lib/emod_api/schema copying emod_api/schema/__main__.py -> build/lib/emod_api/schema copying emod_api/schema/get_schema.py -> build/lib/emod_api/schema copying emod_api/schema/dtk_post_process_schema.py -> build/lib/emod_api/schema copying emod_api/schema/__init__.py -> build/lib/emod_api/schema creating build/lib/emod_api/channelreports copying emod_api/channelreports/channels.py -> build/lib/emod_api/channelreports copying emod_api/channelreports/__main__.py -> build/lib/emod_api/channelreports copying emod_api/channelreports/__init__.py -> build/lib/emod_api/channelreports creating build/lib/emod_api/demographics copying emod_api/demographics/DemographicsGenerator.py -> build/lib/emod_api/demographics copying emod_api/demographics/demographics_utils.py -> build/lib/emod_api/demographics copying emod_api/demographics/__main__.py -> build/lib/emod_api/demographics copying emod_api/demographics/Node.py -> build/lib/emod_api/demographics copying emod_api/demographics/PreDefinedDistributions.py -> build/lib/emod_api/demographics copying emod_api/demographics/__init__.py -> build/lib/emod_api/demographics copying emod_api/demographics/Demographics.py -> build/lib/emod_api/demographics copying emod_api/demographics/Updateable.py -> build/lib/emod_api/demographics copying emod_api/demographics/DemographicsInputDataParsers.py -> build/lib/emod_api/demographics copying emod_api/demographics/BaseInputFile.py -> build/lib/emod_api/demographics copying emod_api/demographics/PropertiesAndAttributes.py -> build/lib/emod_api/demographics copying emod_api/demographics/DemographicsTemplates.py -> build/lib/emod_api/demographics copying emod_api/demographics/grid_construction.py -> build/lib/emod_api/demographics creating build/lib/emod_api/spatialreports copying emod_api/spatialreports/__main__.py -> build/lib/emod_api/spatialreports copying emod_api/spatialreports/spatial.py -> build/lib/emod_api/spatialreports copying emod_api/spatialreports/__init__.py -> build/lib/emod_api/spatialreports creating build/lib/emod_api/serialization copying emod_api/serialization/dtkFileTools.py -> build/lib/emod_api/serialization copying emod_api/serialization/__main__.py -> build/lib/emod_api/serialization copying emod_api/serialization/dtkFileUtility.py -> build/lib/emod_api/serialization copying emod_api/serialization/__init__.py -> build/lib/emod_api/serialization copying emod_api/serialization/CensusAndModPop.py -> build/lib/emod_api/serialization copying emod_api/serialization/dtkFileSupport.py -> build/lib/emod_api/serialization copying emod_api/serialization/SerializedPopulation.py -> build/lib/emod_api/serialization creating build/lib/emod_api/config copying emod_api/config/from_overrides.py -> build/lib/emod_api/config copying emod_api/config/schema_to_config.py -> build/lib/emod_api/config copying emod_api/config/__main__.py -> build/lib/emod_api/config copying emod_api/config/dtk_pre_process_w5ml.py -> build/lib/emod_api/config copying emod_api/config/default_from_schema_no_validation.py -> build/lib/emod_api/config copying emod_api/config/dtk_post_process_adhocevents.py -> build/lib/emod_api/config copying emod_api/config/dtk_pre_process_adhocevents.py -> build/lib/emod_api/config copying emod_api/config/__init__.py -> build/lib/emod_api/config copying emod_api/config/from_poi_and_binary.py -> build/lib/emod_api/config copying emod_api/config/from_schema.py -> build/lib/emod_api/config copying emod_api/config/default_from_schema.py -> build/lib/emod_api/config creating build/lib/emod_api/migration copying emod_api/migration/__main__.py -> build/lib/emod_api/migration copying emod_api/migration/migration.py -> build/lib/emod_api/migration copying emod_api/migration/__init__.py -> build/lib/emod_api/migration creating build/lib/emod_api/interventions copying emod_api/interventions/common.py -> build/lib/emod_api/interventions copying emod_api/interventions/__main__.py -> build/lib/emod_api/interventions copying emod_api/interventions/outbreak.py -> build/lib/emod_api/interventions copying emod_api/interventions/ccdl.py -> build/lib/emod_api/interventions copying emod_api/interventions/ccdl_viz.py -> build/lib/emod_api/interventions copying emod_api/interventions/migration.py -> build/lib/emod_api/interventions copying emod_api/interventions/__init__.py -> build/lib/emod_api/interventions copying emod_api/interventions/import_pressure.py -> build/lib/emod_api/interventions copying emod_api/interventions/node_multiplier.py -> build/lib/emod_api/interventions copying emod_api/interventions/utils.py -> build/lib/emod_api/interventions copying emod_api/interventions/simple_vaccine.py -> build/lib/emod_api/interventions creating build/lib/emod_api/tabularoutput copying emod_api/tabularoutput/__main__.py -> build/lib/emod_api/tabularoutput copying emod_api/tabularoutput/__init__.py -> build/lib/emod_api/tabularoutput creating build/lib/emod_api/migration/client copying emod_api/migration/client/__init__.py -> build/lib/emod_api/migration/client copying emod_api/migration/client/client.py -> build/lib/emod_api/migration/client creating build/lib/tests creating build/lib/tests/unittests copying tests/unittests/test_config_imports.py -> build/lib/tests/unittests copying tests/unittests/test_properties_and_attributes.py -> build/lib/tests/unittests copying tests/unittests/test_version.py -> build/lib/tests/unittests copying tests/unittests/__init__.py -> build/lib/tests/unittests copying tests/unittests/test_schema_imports.py -> build/lib/tests/unittests copying tests/unittests/test_demographics_imports.py -> build/lib/tests/unittests copying tests/unittests/test_migration_imports.py -> build/lib/tests/unittests creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/egg creating build/bdist.linux-x86_64/egg/examples copying build/lib/examples/some_config_i_found.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/write_config_from_default_and_params.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/serialized_file_mc_to_sc.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/intervention_from_schema.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/spatial_report.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/migration.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/weather_file.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/__init__.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/insetchart.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/default_from_schema.py -> build/bdist.linux-x86_64/egg/examples creating build/bdist.linux-x86_64/egg/emod_api creating build/bdist.linux-x86_64/egg/emod_api/weather copying build/lib/emod_api/weather/weather.py -> build/bdist.linux-x86_64/egg/emod_api/weather copying build/lib/emod_api/weather/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/weather copying build/lib/emod_api/weather/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/weather creating build/bdist.linux-x86_64/egg/emod_api/schema copying build/lib/emod_api/schema/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/schema copying build/lib/emod_api/schema/get_schema.py -> build/bdist.linux-x86_64/egg/emod_api/schema copying build/lib/emod_api/schema/dtk_post_process_schema.py -> build/bdist.linux-x86_64/egg/emod_api/schema copying build/lib/emod_api/schema/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/schema creating build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/channelreports/channels.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/channelreports/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/channelreports/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/__main__.py -> build/bdist.linux-x86_64/egg/emod_api copying build/lib/emod_api/peek_camp.py -> build/bdist.linux-x86_64/egg/emod_api creating build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/DemographicsGenerator.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/demographics_utils.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/Node.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/PreDefinedDistributions.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/Demographics.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/Updateable.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/DemographicsInputDataParsers.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/BaseInputFile.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/PropertiesAndAttributes.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/DemographicsTemplates.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/grid_construction.py -> build/bdist.linux-x86_64/egg/emod_api/demographics creating build/bdist.linux-x86_64/egg/emod_api/spatialreports copying build/lib/emod_api/spatialreports/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/spatialreports copying build/lib/emod_api/spatialreports/spatial.py -> build/bdist.linux-x86_64/egg/emod_api/spatialreports copying build/lib/emod_api/spatialreports/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/spatialreports copying build/lib/emod_api/campaign.py -> build/bdist.linux-x86_64/egg/emod_api creating build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/dtkFileTools.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/dtkFileUtility.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/CensusAndModPop.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/dtkFileSupport.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/SerializedPopulation.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/__init__.py -> build/bdist.linux-x86_64/egg/emod_api creating build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/from_overrides.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/schema_to_config.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/dtk_pre_process_w5ml.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/default_from_schema_no_validation.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/dtk_post_process_adhocevents.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/dtk_pre_process_adhocevents.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/from_poi_and_binary.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/from_schema.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/default_from_schema.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/schema_to_class.py -> build/bdist.linux-x86_64/egg/emod_api creating build/bdist.linux-x86_64/egg/emod_api/migration copying build/lib/emod_api/migration/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/migration copying build/lib/emod_api/migration/migration.py -> build/bdist.linux-x86_64/egg/emod_api/migration copying build/lib/emod_api/migration/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/migration creating build/bdist.linux-x86_64/egg/emod_api/migration/client copying build/lib/emod_api/migration/client/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/migration/client copying build/lib/emod_api/migration/client/client.py -> build/bdist.linux-x86_64/egg/emod_api/migration/client creating build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/common.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/outbreak.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/ccdl.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/ccdl_viz.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/migration.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/import_pressure.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/node_multiplier.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/utils.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/simple_vaccine.py -> build/bdist.linux-x86_64/egg/emod_api/interventions creating build/bdist.linux-x86_64/egg/emod_api/tabularoutput copying build/lib/emod_api/tabularoutput/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/tabularoutput copying build/lib/emod_api/tabularoutput/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/tabularoutput creating build/bdist.linux-x86_64/egg/tests creating build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_config_imports.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_properties_and_attributes.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_version.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/__init__.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_schema_imports.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_demographics_imports.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_migration_imports.py -> build/bdist.linux-x86_64/egg/tests/unittests byte-compiling build/bdist.linux-x86_64/egg/examples/some_config_i_found.py to some_config_i_found.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/write_config_from_default_and_params.py to write_config_from_default_and_params.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/serialized_file_mc_to_sc.py to serialized_file_mc_to_sc.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/intervention_from_schema.py to intervention_from_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/spatial_report.py to spatial_report.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/migration.py to migration.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/weather_file.py to weather_file.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/insetchart.py to insetchart.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/default_from_schema.py to default_from_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/weather/weather.py to weather.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/weather/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/weather/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema/get_schema.py to get_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema/dtk_post_process_schema.py to dtk_post_process_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/channels.py to channels.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/peek_camp.py to peek_camp.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/DemographicsGenerator.py to DemographicsGenerator.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/demographics_utils.py to demographics_utils.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/Node.py to Node.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/PreDefinedDistributions.py to PreDefinedDistributions.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/Demographics.py to Demographics.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/Updateable.py to Updateable.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/DemographicsInputDataParsers.py to DemographicsInputDataParsers.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/BaseInputFile.py to BaseInputFile.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/PropertiesAndAttributes.py to PropertiesAndAttributes.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/DemographicsTemplates.py to DemographicsTemplates.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/grid_construction.py to grid_construction.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/spatialreports/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/spatialreports/spatial.py to spatial.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/spatialreports/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/campaign.py to campaign.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/dtkFileTools.py to dtkFileTools.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/dtkFileUtility.py to dtkFileUtility.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/CensusAndModPop.py to CensusAndModPop.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/dtkFileSupport.py to dtkFileSupport.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/SerializedPopulation.py to SerializedPopulation.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/from_overrides.py to from_overrides.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/schema_to_config.py to schema_to_config.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/dtk_pre_process_w5ml.py to dtk_pre_process_w5ml.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/default_from_schema_no_validation.py to default_from_schema_no_validation.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/dtk_post_process_adhocevents.py to dtk_post_process_adhocevents.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/dtk_pre_process_adhocevents.py to dtk_pre_process_adhocevents.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/from_poi_and_binary.py to from_poi_and_binary.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/from_schema.py to from_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/default_from_schema.py to default_from_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema_to_class.py to schema_to_class.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/migration.py to migration.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/client/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/client/client.py to client.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/common.py to common.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/outbreak.py to outbreak.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/ccdl.py to ccdl.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/ccdl_viz.py to ccdl_viz.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/migration.py to migration.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/import_pressure.py to import_pressure.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/node_multiplier.py to node_multiplier.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/utils.py to utils.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/simple_vaccine.py to simple_vaccine.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/tabularoutput/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/tabularoutput/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_config_imports.py to test_config_imports.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_properties_and_attributes.py to test_properties_and_attributes.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_version.py to test_version.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_schema_imports.py to test_schema_imports.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_demographics_imports.py to test_demographics_imports.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_migration_imports.py to test_migration_imports.cpython-37.pyc creating build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/PKG-INFO -> build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/SOURCES.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/dependency_links.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/requires.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/top_level.txt -> build/bdist.linux-x86_64/egg/EGG-INFO zip_safe flag not set; analyzing archive contents... emod_api.config.__pycache__.from_poi_and_binary.cpython-37: module references __file__ emod_api.serialization.__pycache__.dtkFileTools.cpython-37: module references __file__ emod_api.serialization.__pycache__.dtkFileUtility.cpython-37: module references __file__ emod_api.spatialreports.__pycache__.__main__.cpython-37: module references __file__ examples.__pycache__.insetchart.cpython-37: module references __file__ examples.__pycache__.spatial_report.cpython-37: module references __file__ examples.__pycache__.weather_file.cpython-37: module references __file__ creating dist creating 'dist/emod_api-1.25.7-py3.7.egg' and adding 'build/bdist.linux-x86_64/egg' to it removing 'build/bdist.linux-x86_64/egg' (and everything under it) Processing emod_api-1.25.7-py3.7.egg creating /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages/emod_api-1.25.7-py3.7.egg Extracting emod_api-1.25.7-py3.7.egg to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Adding emod-api 1.25.7 to easy-install.pth file Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages/emod_api-1.25.7-py3.7.egg Processing dependencies for emod-api==1.25.7 Searching for parse==1.19.0 Best match: parse 1.19.0 Adding parse 1.19.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for graphviz==0.20.1 Best match: graphviz 0.20.1 Adding graphviz 0.20.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for prodict==0.8.18 Best match: prodict 0.8.18 Adding prodict 0.8.18 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for lz4==4.0.2 Best match: lz4 4.0.2 Adding lz4 4.0.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for sklearn==0.0 Best match: sklearn 0.0 Adding sklearn 0.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for geographiclib==2.0 Best match: geographiclib 2.0 Adding geographiclib 2.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for pyproj==3.2.1 Best match: pyproj 3.2.1 Adding pyproj 3.2.1 to easy-install.pth file Installing pyproj script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for Shapely==1.8.2 Best match: Shapely 1.8.2 Adding Shapely 1.8.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for scipy==1.5.3 Best match: scipy 1.5.3 Adding scipy 1.5.3 to easy-install.pth file Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages Searching for pandas==1.1.3 Best match: pandas 1.1.3 pandas 1.1.3 is already the active version in easy-install.pth Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages Searching for PyYAML==6.0 Best match: PyYAML 6.0 Adding PyYAML 6.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for numpy==1.19.2 Best match: numpy 1.19.2 numpy 1.19.2 is already the active version in easy-install.pth Installing f2py script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Installing f2py3 script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Installing f2py3.7 script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages Searching for scikit-learn==1.0.2 Best match: scikit-learn 1.0.2 Adding scikit-learn 1.0.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for certifi==2022.6.15 Best match: certifi 2022.6.15 Adding certifi 2022.6.15 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for pytz==2022.1 Best match: pytz 2022.1 Adding pytz 2022.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for python-dateutil==2.8.1 Best match: python-dateutil 2.8.1 python-dateutil 2.8.1 is already the active version in easy-install.pth Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages Searching for threadpoolctl==3.1.0 Best match: threadpoolctl 3.1.0 Adding threadpoolctl 3.1.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for joblib==1.1.0 Best match: joblib 1.1.0 Adding joblib 1.1.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for six==1.16.0 Best match: six 1.16.0 Adding six 1.16.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Finished processing dependencies for emod-api==1.25.7 [rtd-command-info] start-time: 2022-08-02T20:37:33.321586Z, end-time: 2022-08-02T20:37:33.401744Z, duration: 0, exit-code: 0 cat docs/conf.py # -*- coding: utf-8 -*- # # Sphinx Demo docs build configuration file, created by # sphinx-quickstart on Fri Aug 26 16:52:16 2016. # # This file is execfile()d with the current directory set to its # containing dir. # # Note that not all possible configuration values are present in this # autogenerated file. # # All configuration values have a default; values that are commented out # serve to show the default. # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # docs root, use os.path.abspath to make it absolute, like shown here. # import os import subprocess import sys import sphinx_rtd_theme import configparser from datetime import datetime if sys.platform in ["linux", "darwin"]: subprocess.check_output(["make", "generate-api"], cwd=os.path.dirname(os.path.abspath(__file__))) else: subprocess.check_output(["make.bat", "generate-api"], cwd=os.path.dirname(os.path.abspath(__file__))) # Rename "emod-api" to "API reference" filename = 'modules.rst' # This must match the Makefile with open(filename) as f: # Read existing file lines = f.readlines() lines[0] = "API reference\n" # Blast away the existing heading and replace with this lines[1] = "=============\n" # Ensure the heading is the right length with open(filename, "w") as f: # Write new file f.writelines(lines) # -- General configuration ------------------------------------------------ tags.add('emodapi') # If your docs needs a minimal Sphinx version, state it here. # # needs_sphinx = '1.0' # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = [ 'sphinx.ext.mathjax', 'sphinx.ext.githubpages', 'sphinx.ext.autodoc', 'sphinxcontrib.napoleon', 'sphinx.ext.todo', 'plantweb.directive', 'sphinxcontrib.programoutput', 'sphinx_copybutton', 'sphinx.ext.intersphinx', 'sphinxext.remoteliteralinclude', 'sphinx.ext.viewcode' ] plantuml = 'plantweb' autodoc_default_options = { 'member-order': 'bysource', 'members': None, 'exclude-members': '__all__' } autodoc_mock_imports = ['emod_api.dtk_tools'] napoleon_google_docstring = True # napoleon_numpy_docstring = True # Add any paths that contain templates here, relative to this directory. templates_path = ['_templates'] # The suffix(es) of source filenames. # You can specify multiple suffix as a list of string: # # source_suffix = ['.rst', '.md'] source_suffix = '.rst' # The encoding of source files. # # source_encoding = 'utf-8-sig' # The master toctree document. master_doc = 'index' # General information about the project. project = u'emod-api' copyright = f'1999 - {datetime.today().year}, Bill & Melinda Gates Foundation. All rights reserved.' author = u'Institute for Disease Modeling' # The version info for the project you're documenting, acts as replacement for # |version| and |release|, also used in various other places throughout the # built documents. # # The short X.Y version. #current_path = os.path.dirname(__file__) #version_path = os.path.join(current_path, '..', '.bumpversion.cfg') #config = configparser.ConfigParser() #config.read(version_path) #version = config['bumpversion']['current_version'] # The full version, including alpha/beta/rc tags. # release = u'1.0' # The language for content autogenerated by Sphinx. Refer to docs # for a list of supported languages. # # This is also used if you do content translation via gettext catalogs. # Usually you set "language" from the command line for these cases. language = None # There are two options for replacing |today|: either, you set today to some # non-false value, then it is used: # # today = '' # # Else, today_fmt is used as the format for a strftime call. # # today_fmt = '%B %d, %Y' # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. # This patterns also effect to html_static_path and html_extra_path exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store'] # The reST default role (used for this markup: `text`) to use for all # documents. # # default_role = None # If true, '()' will be appended to :func: etc. cross-reference text. # # add_function_parentheses = True # If true, the current module name will be prepended to all description # unit titles (such as .. function::). # # add_module_names = True # If true, sectionauthor and moduleauthor directives will be shown in the # output. They are ignored by default. # # show_authors = False # The name of the Pygments (syntax highlighting) style to use. pygments_style = 'sphinx' # A list of ignored prefixes for module index sorting. # modindex_common_prefix = [] # If true, keep warnings as "system message" paragraphs in the built documents. # keep_warnings = False # If true, `todo` and `todoList` produce output, else they produce nothing. todo_include_todos = False # RST epilog is added to the end of every topic. Useful for replace # directives to use across the docset. rst_epilog = "\n.. include:: /variables.txt" # -- Options for HTML output ---------------------------------------------- # The theme to use for HTML and HTML Help pages. See the docs for # a list of builtin themes. # html_theme = 'sphinx_rtd_theme' # Theme options are theme-specific and customize the look and feel of a theme # further. For a list of options available for each theme, see the # docs. # # # html_theme_options = { # } # Add any paths that contain custom themes here, relative to this directory. html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] # The name for this set of Sphinx documents. # " v docs" by default. # # html_title = u'Sphinx Demo v1.0' # A shorter title for the navigation bar. Default is the same as html_title. # # html_short_title = None # The name of an image file (relative to this directory) to place at the top # of the sidebar. # html_logo = "images/IDM_white.png" # The name of an image file (relative to this directory) to use as a favicon of # the docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32 # pixels large. # html_favicon = "images/favicon.ico" # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". html_static_path = ['_static'] html_context = { 'css_files': [ '_static/theme_overrides.css', '_static/copy_button.css' ] } html_js_files = ['show_block_by_os.js'] # Add any extra paths that contain custom files (such as robots.txt or # .htaccess) here, relative to this directory. These files are copied # directly to the root of the docs. # # html_extra_path = [] # If not None, a 'Last updated on:' timestamp is inserted at every page # bottom, using the given strftime format. # The empty string is equivalent to '%b %d, %Y'. # # html_last_updated_fmt = None # If true, SmartyPants will be used to convert quotes and dashes to # typographically correct entities. # # html_use_smartypants = True # Custom sidebar templates, maps document names to template names. # # html_sidebars = {} # Additional templates that should be rendered to pages, maps page names to # template names. # # html_additional_pages = {} # If false, no module index is generated. # # html_domain_indices = True # If false, no index is generated. # # html_use_index = True # If true, the index is split into individual pages for each letter. # # html_split_index = False # If true, links to the reST sources are added to the pages. # html_show_sourcelink = False # If true, "Created using Sphinx" is shown in the HTML footer. Default is True. # html_show_sphinx = False # If true, "(C) Copyright ..." is shown in the HTML footer. Default is True. # # html_show_copyright = True # If true, an OpenSearch description file will be output, and all pages will # contain a tag referring to it. The value of this option must be the # base URL from which the finished HTML is served. # html_use_opensearch = 'www.idmod.org/docs/' # This is the file name suffix for HTML files (e.g. ".xhtml"). # html_file_suffix = None # Language to be used for generating the HTML full-text search index. # Sphinx supports the following languages: # 'da', 'de', 'en', 'es', 'fi', 'fr', 'hu', 'it', 'ja' # 'nl', 'no', 'pt', 'ro', 'ru', 'sv', 'tr', 'zh' # # html_search_language = 'en' # A dictionary with options for the search language support, empty by default. # 'ja' uses this config value. # 'zh' user can custom change `jieba` dictionary path. # # html_search_options = {'type': 'default'} # The name of a javascript file (relative to the configuration directory) that # implements a search results scorer. If empty, the default will be used. # # html_search_scorer = 'scorer.js' # Output file base name for HTML help builder. htmlhelp_basename = 'EMOD-API' # -- Options for LaTeX output --------------------------------------------- latex_elements = { # The paper size ('letterpaper' or 'a4paper'). # # 'papersize': 'letterpaper', # The font size ('10pt', '11pt' or '12pt'). # # 'pointsize': '10pt', # Additional stuff for the LaTeX preamble. # # 'preamble': '', # Latex figure (float) alignment # # 'figure_align': 'htbp', } # Grouping the document tree into LaTeX files. List of tuples # (source start file, target name, title, # author, documentclass [howto, manual, or own class]). latex_documents = [ (master_doc, 'emod-api-docs.tex', u'emod-api', u'Institute for Disease Modeling', 'manual'), ] # The name of an image file (relative to this directory) to place at the top of # the title page. # # latex_logo = None # For "manual" documents, if this is true, then toplevel headings are parts, # not chapters. # # latex_use_parts = False # If true, show page references after internal links. # # latex_show_pagerefs = False # If true, show URL addresses after external links. # # latex_show_urls = False # Documents to append as an appendix to all manuals. # # latex_appendices = [] # It false, will not define \strong, \code, itleref, \crossref ... but only # \sphinxstrong, ..., \sphinxtitleref, ... To help avoid clash with user added # packages. # # latex_keep_old_macro_names = True # If false, no module index is generated. # # latex_domain_indices = True # -- Options for manual page output --------------------------------------- # One entry per manual page. List of tuples # (source start file, name, description, authors, manual section). man_pages = [ (master_doc, 'emod-api-docs', u'emod-api', [author], 1) ] # If true, show URL addresses after external links. # man_show_urls = True # -- Options for Texinfo output ------------------------------------------- # Grouping the document tree into Texinfo files. List of tuples # (source start file, target name, title, author, # dir menu entry, description, category) texinfo_documents = [ (master_doc, 'emod-api-docs', u'emod-api', author, 'Institute for Disease Modeling', 'How to use emodpy for disease simulations.', 'Miscellaneous'), ] # Documents to append as an appendix to all manuals. # # texinfo_appendices = [] # If false, no module index is generated. # # texinfo_domain_indices = True # How to display URL addresses: 'footnote', 'no', or 'inline'. # # texinfo_show_urls = 'footnote' # If true, do not generate a @detailmenu in the "Top" node's menu. # # texinfo_no_detailmenu = False # Example configuration for intersphinx: refer to the Python standard library. intersphinx_mapping = {'python': ('https://docs.python.org/3', None), 'emodpy': ('https://docs.idmod.org/projects/emodpy/en/latest/', None), 'idmtools': ('https://docs.idmod.org/projects/idmtools/en/latest/', None), 'pycomps': ('https://docs.idmod.org/projects/pycomps/en/latest/', None) } ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/main/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # # Note: this file shouldn't rely on extra dependencies. import importlib import sys import os.path # Borrowed from six. PY3 = sys.version_info[0] == 3 string_types = str if PY3 else basestring from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix elif isinstance(source_suffix, (list, tuple)): # Sphinx >= 1.3 supports list/tuple to define multiple suffixes SUFFIX = source_suffix[0] elif isinstance(source_suffix, dict): # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility else: # default to .rst SUFFIX = '.rst' else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = ( ( 'html_theme' in globals() and html_theme in ['default'] and # Allow people to bail with a hack of having an html_style 'html_style' not in globals() ) or 'html_theme' not in globals() ) if using_rtd_theme: theme = importlib.import_module('sphinx_rtd_theme') html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(theme.get_html_theme_path()) else: html_theme_path = [theme.get_html_theme_path()] if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.com/websupport' websupport2_static_url = 'https://assets.readthedocs.com/' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "latest", 'version_slug': "latest", 'MEDIA_URL': "https://media.readthedocs.com/media/", 'STATIC_URL': "https://assets.readthedocs.com/", 'PRODUCTION_DOMAIN': "readthedocs.com", 'proxied_static_path': "/_/static/", 'versions': [ ("latest", "/en/latest/"), ("v2.0.1", "/en/v2.0.1/"), ("v1.25.1", "/en/v1.25.1/"), ("v1.24.11", "/en/v1.24.11/"), ("v1.24.8", "/en/v1.24.8/"), ("v1.24.1", "/en/v1.24.1/"), ("v1.23.2", "/en/v1.23.2/"), ("v1.23.1", "/en/v1.23.1/"), ("v1.22.11", "/en/v1.22.11/"), ("v1.22.10", "/en/v1.22.10/"), ("v1.22.9", "/en/v1.22.9/"), ("v1.22.1", "/en/v1.22.1/"), ("v1.22.0", "/en/v1.22.0/"), ("v1.21.1", "/en/v1.21.1/"), ("v1.20.2", "/en/v1.20.2/"), ("v1.20.1", "/en/v1.20.1/"), ("v1.19.13", "/en/v1.19.13/"), ("v1.19.2", "/en/v1.19.2/"), ("v1.18.1", "/en/v1.18.1/"), ("v1.17.4", "/en/v1.17.4/"), ("v1.17.3", "/en/v1.17.3/"), ("v1.17.2", "/en/v1.17.2/"), ("v1.16.10", "/en/v1.16.10/"), ("v1.16.5", "/en/v1.16.5/"), ("v1.16.2", "/en/v1.16.2/"), ("v1.15.6", "/en/v1.15.6/"), ("v1.15.4", "/en/v1.15.4/"), ("v1.15.1", "/en/v1.15.1/"), ("v1.14.7", "/en/v1.14.7/"), ("v1.14.1", "/en/v1.14.1/"), ("v1.13.1", "/en/v1.13.1/"), ("v1.12.1", "/en/v1.12.1/"), ("v1.11.7", "/en/v1.11.7/"), ("v1.11.4", "/en/v1.11.4/"), ("v1.11.0", "/en/v1.11.0/"), ("v1.10.8", "/en/v1.10.8/"), ("v1.10.6", "/en/v1.10.6/"), ("v1.10.5", "/en/v1.10.5/"), ("v1.10.3", "/en/v1.10.3/"), ("v1.10.2", "/en/v1.10.2/"), ("v1.9.2", "/en/v1.9.2/"), ("v1.9.1", "/en/v1.9.1/"), ("v1.8.9", "/en/v1.8.9/"), ("v1.8.8", "/en/v1.8.8/"), ("v1.8.6", "/en/v1.8.6/"), ("v1.8.2", "/en/v1.8.2/"), ("v1.7.5", "/en/v1.7.5/"), ("v1.7.4", "/en/v1.7.4/"), ("v1.7.1", "/en/v1.7.1/"), ("v1.6.3", "/en/v1.6.3/"), ("v1.5.1", "/en/v1.5.1/"), ("v1.5.0", "/en/v1.5.0/"), ], 'downloads': [ ("pdf", "//docs.idmod.org/_/downloads/emod-api/en/latest/pdf/"), ("html", "//docs.idmod.org/_/downloads/emod-api/en/latest/htmlzip/"), ], 'subprojects': [ ], 'slug': 'institute-for-disease-modeling-emod-api', 'name': u'emod-api', 'rtd_language': u'en', 'programming_language': u'py', 'canonical_url': 'https://docs.idmod.org/projects/emod-api/en/latest/', 'analytics_code': 'UA-87656833-3', 'single_version': False, 'conf_py_path': '/docs/', 'api_host': 'https://readthedocs.com', 'github_user': 'InstituteforDiseaseModeling', 'proxied_api_host': '/_', 'github_repo': 'emod-api', 'github_version': 'master', 'display_github': True, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'master', 'display_bitbucket': False, 'gitlab_user': 'None', 'gitlab_repo': 'None', 'gitlab_version': 'master', 'display_gitlab': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'ad_free': False, 'docsearch_disabled': False, 'user_analytics_code': 'UA-87656833-3', 'global_analytics_code': 'UA-17997319-2', 'commit': 'dd364491', } # For sphinx >=1.8 we can use html_baseurl to set the canonical URL. # https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-html_baseurl if version_info >= (1, 8): if not globals().get('html_baseurl'): html_baseurl = context['canonical_url'] context['canonical_url'] = None if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): # Insert at the beginning because it can interfere # with other extensions. # See https://github.com/rtfd/readthedocs.org/pull/4054 extensions.insert(0, "readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] # Add External version warning banner to the external version documentation if 'branch' == 'external': extensions.insert(1, "readthedocs_ext.external_version_warning") readthedocs_vcs_url = 'None' readthedocs_build_url = 'https://readthedocs.com/projects/institute-for-disease-modeling-emod-api/builds/1037628/' project_language = 'en' # User's Sphinx configurations language_user = globals().get('language', None) latex_engine_user = globals().get('latex_engine', None) latex_elements_user = globals().get('latex_elements', None) # Remove this once xindy gets installed in Docker image and XINDYOPS # env variable is supported # https://github.com/rtfd/readthedocs-docker-images/pull/98 latex_use_xindy = False chinese = any([ language_user in ('zh_CN', 'zh_TW'), project_language in ('zh_CN', 'zh_TW'), ]) japanese = any([ language_user == 'ja', project_language == 'ja', ]) if chinese: latex_engine = latex_engine_user or 'xelatex' latex_elements_rtd = { 'preamble': '\\usepackage[UTF8]{ctex}\n', } latex_elements = latex_elements_user or latex_elements_rtd elif japanese: latex_engine = latex_engine_user or 'platex' # Make sure our build directory is always excluded exclude_patterns = globals().get('exclude_patterns', []) exclude_patterns.extend(['_build']) [rtd-command-info] start-time: 2022-08-02T20:37:33.662548Z, end-time: 2022-08-02T20:38:04.810550Z, duration: 31, exit-code: 0 python -m sphinx -T -E -W --keep-going -b html -d _build/doctrees -D language=en . _build/html Running Sphinx v4.4.0 loading translations [en]... done making output directory... done loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emodpy/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/idmtools/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/pycomps/en/latest/objects.inv... building [mo]: targets for 0 po files that are out of date building [html]: targets for 61 source files that are out of date updating environment: [new config] 61 added, 0 changed, 0 removed reading sources... [ 1%] emod_api reading sources... [ 3%] emod_api.campaign reading sources... [ 4%] emod_api.channelreports reading sources... [ 6%] emod_api.channelreports.channels reading sources... [ 8%] emod_api.config reading sources... [ 9%] emod_api.config.default_from_schema reading sources... [ 11%] emod_api.config.default_from_schema_no_validation reading sources... [ 13%] emod_api.config.dtk_post_process_adhocevents reading sources... [ 14%] emod_api.config.dtk_pre_process_adhocevents reading sources... [ 16%] emod_api.config.dtk_pre_process_w5ml reading sources... [ 18%] emod_api.config.from_overrides reading sources... [ 19%] emod_api.config.from_poi_and_binary reading sources... [ 21%] emod_api.config.from_schema reading sources... [ 22%] emod_api.config.schema_to_config emod_api.config.schema_to_config is deprecated. Please use emod_api.config.from_schema. reading sources... [ 24%] emod_api.demographics reading sources... [ 26%] emod_api.demographics.BaseInputFile reading sources... [ 27%] emod_api.demographics.Demographics reading sources... [ 29%] emod_api.demographics.DemographicsGenerator reading sources... [ 31%] emod_api.demographics.DemographicsInputDataParsers reading sources... [ 32%] emod_api.demographics.DemographicsTemplates reading sources... [ 34%] emod_api.demographics.Node reading sources... [ 36%] emod_api.demographics.PreDefinedDistributions reading sources... [ 37%] emod_api.demographics.PropertiesAndAttributes reading sources... [ 39%] emod_api.demographics.Updateable reading sources... [ 40%] emod_api.demographics.demographics_utils reading sources... [ 42%] emod_api.demographics.grid_construction reading sources... [ 44%] emod_api.interventions reading sources... [ 45%] emod_api.interventions.ccdl reading sources... [ 47%] emod_api.interventions.ccdl_viz reading sources... [ 49%] emod_api.interventions.common reading sources... [ 50%] emod_api.interventions.import_pressure reading sources... [ 52%] emod_api.interventions.migration reading sources... [ 54%] emod_api.interventions.node_multiplier reading sources... [ 55%] emod_api.interventions.outbreak reading sources... [ 57%] emod_api.interventions.simple_vaccine reading sources... [ 59%] emod_api.interventions.utils reading sources... [ 60%] emod_api.migration reading sources... [ 62%] emod_api.migration.client reading sources... [ 63%] emod_api.migration.client.client reading sources... [ 65%] emod_api.migration.migration reading sources... [ 67%] emod_api.peek_camp reading sources... [ 68%] emod_api.schema reading sources... [ 70%] emod_api.schema.dtk_post_process_schema reading sources... [ 72%] emod_api.schema.get_schema reading sources... [ 73%] emod_api.schema_to_class reading sources... [ 75%] emod_api.serialization reading sources... [ 77%] emod_api.serialization.CensusAndModPop reading sources... [ 78%] emod_api.serialization.SerializedPopulation reading sources... [ 80%] emod_api.serialization.dtkFileSupport reading sources... [ 81%] emod_api.serialization.dtkFileTools reading sources... [ 83%] emod_api.serialization.dtkFileUtility reading sources... [ 85%] emod_api.spatialreports reading sources... [ 86%] emod_api.spatialreports.spatial reading sources... [ 88%] emod_api.tabularoutput reading sources... [ 90%] emod_api.weather reading sources... [ 91%] emod_api.weather.weather reading sources... [ 93%] faq reading sources... [ 95%] glossary reading sources... [ 96%] index reading sources... [ 98%] installation reading sources... [100%] modules looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 1%] emod_api writing output... [ 3%] emod_api.campaign writing output... [ 4%] emod_api.channelreports writing output... [ 6%] emod_api.channelreports.channels writing output... [ 8%] emod_api.config writing output... [ 9%] emod_api.config.default_from_schema writing output... [ 11%] emod_api.config.default_from_schema_no_validation writing output... [ 13%] emod_api.config.dtk_post_process_adhocevents writing output... [ 14%] emod_api.config.dtk_pre_process_adhocevents writing output... [ 16%] emod_api.config.dtk_pre_process_w5ml writing output... [ 18%] emod_api.config.from_overrides writing output... [ 19%] emod_api.config.from_poi_and_binary writing output... [ 21%] emod_api.config.from_schema writing output... [ 22%] emod_api.config.schema_to_config writing output... [ 24%] emod_api.demographics writing output... [ 26%] emod_api.demographics.BaseInputFile writing output... [ 27%] emod_api.demographics.Demographics writing output... [ 29%] emod_api.demographics.DemographicsGenerator writing output... [ 31%] emod_api.demographics.DemographicsInputDataParsers writing output... [ 32%] emod_api.demographics.DemographicsTemplates writing output... [ 34%] emod_api.demographics.Node writing output... [ 36%] emod_api.demographics.PreDefinedDistributions writing output... [ 37%] emod_api.demographics.PropertiesAndAttributes writing output... [ 39%] emod_api.demographics.Updateable writing output... [ 40%] emod_api.demographics.demographics_utils writing output... [ 42%] emod_api.demographics.grid_construction writing output... [ 44%] emod_api.interventions writing output... [ 45%] emod_api.interventions.ccdl writing output... [ 47%] emod_api.interventions.ccdl_viz writing output... [ 49%] emod_api.interventions.common writing output... [ 50%] emod_api.interventions.import_pressure writing output... [ 52%] emod_api.interventions.migration writing output... [ 54%] emod_api.interventions.node_multiplier writing output... [ 55%] emod_api.interventions.outbreak writing output... [ 57%] emod_api.interventions.simple_vaccine writing output... [ 59%] emod_api.interventions.utils writing output... [ 60%] emod_api.migration writing output... [ 62%] emod_api.migration.client writing output... [ 63%] emod_api.migration.client.client writing output... [ 65%] emod_api.migration.migration writing output... [ 67%] emod_api.peek_camp writing output... [ 68%] emod_api.schema writing output... [ 70%] emod_api.schema.dtk_post_process_schema writing output... [ 72%] emod_api.schema.get_schema writing output... [ 73%] emod_api.schema_to_class writing output... [ 75%] emod_api.serialization writing output... [ 77%] emod_api.serialization.CensusAndModPop writing output... [ 78%] emod_api.serialization.SerializedPopulation writing output... [ 80%] emod_api.serialization.dtkFileSupport writing output... [ 81%] emod_api.serialization.dtkFileTools writing output... [ 83%] emod_api.serialization.dtkFileUtility writing output... [ 85%] emod_api.spatialreports writing output... [ 86%] emod_api.spatialreports.spatial writing output... [ 88%] emod_api.tabularoutput writing output... [ 90%] emod_api.weather writing output... [ 91%] emod_api.weather.weather writing output... [ 93%] faq writing output... [ 95%] glossary writing output... [ 96%] index writing output... [ 98%] installation writing output... [100%] modules generating indices... genindex py-modindex done highlighting module code... [ 2%] emod_api.campaign highlighting module code... [ 4%] emod_api.channelreports.channels highlighting module code... [ 7%] emod_api.config.default_from_schema highlighting module code... [ 9%] emod_api.config.default_from_schema_no_validation highlighting module code... [ 11%] emod_api.config.dtk_post_process_adhocevents highlighting module code... [ 14%] emod_api.config.dtk_pre_process_adhocevents highlighting module code... [ 16%] emod_api.config.dtk_pre_process_w5ml highlighting module code... [ 19%] emod_api.config.from_overrides highlighting module code... [ 21%] emod_api.config.from_poi_and_binary highlighting module code... [ 23%] emod_api.config.from_schema highlighting module code... [ 26%] emod_api.config.schema_to_config highlighting module code... [ 28%] emod_api.demographics.BaseInputFile highlighting module code... [ 30%] emod_api.demographics.Demographics highlighting module code... [ 33%] emod_api.demographics.DemographicsGenerator highlighting module code... [ 35%] emod_api.demographics.DemographicsInputDataParsers highlighting module code... [ 38%] emod_api.demographics.DemographicsTemplates highlighting module code... [ 40%] emod_api.demographics.Node highlighting module code... [ 42%] emod_api.demographics.PreDefinedDistributions highlighting module code... [ 45%] emod_api.demographics.PropertiesAndAttributes highlighting module code... [ 47%] emod_api.demographics.Updateable highlighting module code... [ 50%] emod_api.demographics.demographics_utils highlighting module code... [ 52%] emod_api.demographics.grid_construction highlighting module code... [ 54%] emod_api.interventions.ccdl_viz highlighting module code... [ 57%] emod_api.interventions.common highlighting module code... [ 59%] emod_api.interventions.import_pressure highlighting module code... [ 61%] emod_api.interventions.migration highlighting module code... [ 64%] emod_api.interventions.node_multiplier highlighting module code... [ 66%] emod_api.interventions.outbreak highlighting module code... [ 69%] emod_api.interventions.simple_vaccine highlighting module code... [ 71%] emod_api.interventions.utils highlighting module code... [ 73%] emod_api.migration.client.client highlighting module code... [ 76%] emod_api.migration.migration highlighting module code... [ 78%] emod_api.peek_camp highlighting module code... [ 80%] emod_api.schema.dtk_post_process_schema highlighting module code... [ 83%] emod_api.schema.get_schema highlighting module code... [ 85%] emod_api.schema_to_class highlighting module code... [ 88%] emod_api.serialization.CensusAndModPop highlighting module code... [ 90%] emod_api.serialization.SerializedPopulation highlighting module code... [ 92%] emod_api.serialization.dtkFileSupport highlighting module code... [ 95%] emod_api.serialization.dtkFileTools highlighting module code... [ 97%] emod_api.spatialreports.spatial highlighting module code... [100%] emod_api.weather.weather writing additional pages... search opensearch done copying images... [100%] images/fertility_over_time_doc.png copying static files... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done build succeeded. The HTML pages are in _build/html. Updating searchtools for Read the Docs search... [rtd-command-info] start-time: 2022-08-02T20:38:05.088582Z, end-time: 2022-08-02T20:38:14.624139Z, duration: 9, exit-code: 0 python -m sphinx -T -E -W --keep-going -b readthedocssinglehtmllocalmedia -d _build/doctrees -D language=en . _build/localmedia Running Sphinx v4.4.0 loading translations [en]... done making output directory... done loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emodpy/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/idmtools/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/pycomps/en/latest/objects.inv... building [mo]: targets for 0 po files that are out of date building [readthedocssinglehtmllocalmedia]: all documents updating environment: [new config] 61 added, 0 changed, 0 removed reading sources... [ 1%] emod_api reading sources... [ 3%] emod_api.campaign reading sources... [ 4%] emod_api.channelreports reading sources... [ 6%] emod_api.channelreports.channels reading sources... [ 8%] emod_api.config reading sources... [ 9%] emod_api.config.default_from_schema reading sources... [ 11%] emod_api.config.default_from_schema_no_validation reading sources... [ 13%] emod_api.config.dtk_post_process_adhocevents reading sources... [ 14%] emod_api.config.dtk_pre_process_adhocevents reading sources... [ 16%] emod_api.config.dtk_pre_process_w5ml reading sources... [ 18%] emod_api.config.from_overrides reading sources... [ 19%] emod_api.config.from_poi_and_binary reading sources... [ 21%] emod_api.config.from_schema reading sources... [ 22%] emod_api.config.schema_to_config emod_api.config.schema_to_config is deprecated. Please use emod_api.config.from_schema. reading sources... [ 24%] emod_api.demographics reading sources... [ 26%] emod_api.demographics.BaseInputFile reading sources... [ 27%] emod_api.demographics.Demographics reading sources... [ 29%] emod_api.demographics.DemographicsGenerator reading sources... [ 31%] emod_api.demographics.DemographicsInputDataParsers reading sources... [ 32%] emod_api.demographics.DemographicsTemplates reading sources... [ 34%] emod_api.demographics.Node reading sources... [ 36%] emod_api.demographics.PreDefinedDistributions reading sources... [ 37%] emod_api.demographics.PropertiesAndAttributes reading sources... [ 39%] emod_api.demographics.Updateable reading sources... [ 40%] emod_api.demographics.demographics_utils reading sources... [ 42%] emod_api.demographics.grid_construction reading sources... [ 44%] emod_api.interventions reading sources... [ 45%] emod_api.interventions.ccdl reading sources... [ 47%] emod_api.interventions.ccdl_viz reading sources... [ 49%] emod_api.interventions.common reading sources... [ 50%] emod_api.interventions.import_pressure reading sources... [ 52%] emod_api.interventions.migration reading sources... 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[ 81%] emod_api.serialization.dtkFileTools reading sources... [ 83%] emod_api.serialization.dtkFileUtility reading sources... [ 85%] emod_api.spatialreports reading sources... [ 86%] emod_api.spatialreports.spatial reading sources... [ 88%] emod_api.tabularoutput reading sources... [ 90%] emod_api.weather reading sources... [ 91%] emod_api.weather.weather reading sources... [ 93%] faq reading sources... [ 95%] glossary reading sources... [ 96%] index reading sources... [ 98%] installation reading sources... [100%] modules looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done assembling single document... installation faq modules emod_api emod_api.channelreports emod_api.channelreports.channels emod_api.config emod_api.config.default_from_schema emod_api.config.default_from_schema_no_validation emod_api.config.dtk_post_process_adhocevents emod_api.config.dtk_pre_process_adhocevents emod_api.config.dtk_pre_process_w5ml emod_api.config.from_overrides emod_api.config.from_poi_and_binary emod_api.config.from_schema emod_api.config.schema_to_config emod_api.demographics emod_api.demographics.BaseInputFile emod_api.demographics.Demographics emod_api.demographics.DemographicsGenerator emod_api.demographics.DemographicsInputDataParsers emod_api.demographics.DemographicsTemplates emod_api.demographics.Node emod_api.demographics.PreDefinedDistributions emod_api.demographics.PropertiesAndAttributes emod_api.demographics.Updateable emod_api.demographics.demographics_utils emod_api.demographics.grid_construction emod_api.interventions emod_api.interventions.ccdl emod_api.interventions.ccdl_viz emod_api.interventions.common emod_api.interventions.import_pressure emod_api.interventions.migration emod_api.interventions.node_multiplier emod_api.interventions.outbreak emod_api.interventions.simple_vaccine emod_api.interventions.utils emod_api.migration emod_api.migration.client emod_api.migration.client.client emod_api.migration.migration emod_api.schema emod_api.schema.dtk_post_process_schema emod_api.schema.get_schema emod_api.serialization emod_api.serialization.CensusAndModPop emod_api.serialization.SerializedPopulation emod_api.serialization.dtkFileSupport emod_api.serialization.dtkFileTools emod_api.serialization.dtkFileUtility emod_api.spatialreports emod_api.spatialreports.spatial emod_api.tabularoutput emod_api.weather emod_api.weather.weather emod_api.campaign emod_api.peek_camp emod_api.schema_to_class glossary done writing... done writing additional files... opensearchdone copying images... [100%] images/fertility_over_time_doc.png copying static files... done copying extra files... done dumping object inventory... done build succeeded. The HTML page is in _build/localmedia. Updating searchtools for Read the Docs search... [rtd-command-info] start-time: 2022-08-02T20:38:14.882882Z, end-time: 2022-08-02T20:38:17.515000Z, duration: 2, exit-code: 0 python -m sphinx -b latex -D language=en -d _build/doctrees . _build/latex Running Sphinx v4.4.0 loading translations [en]... done making output directory... done loading pickled environment... done building [mo]: targets for 0 po files that are out of date building [latex]: all documents updating environment: 0 added, 1 changed, 0 removed reading sources... [100%] modules looking for now-outdated files... none found pickling environment... done checking consistency... done processing emod-api-docs.tex... index installation faq modules emod_api emod_api.channelreports emod_api.channelreports.channels emod_api.config emod_api.config.default_from_schema emod_api.config.default_from_schema_no_validation emod_api.config.dtk_post_process_adhocevents emod_api.config.dtk_pre_process_adhocevents emod_api.config.dtk_pre_process_w5ml emod_api.config.from_overrides emod_api.config.from_poi_and_binary emod_api.config.from_schema emod_api.config.schema_to_config emod_api.demographics emod_api.demographics.BaseInputFile emod_api.demographics.Demographics emod_api.demographics.DemographicsGenerator emod_api.demographics.DemographicsInputDataParsers emod_api.demographics.DemographicsTemplates emod_api.demographics.Node emod_api.demographics.PreDefinedDistributions emod_api.demographics.PropertiesAndAttributes emod_api.demographics.Updateable emod_api.demographics.demographics_utils emod_api.demographics.grid_construction emod_api.interventions emod_api.interventions.ccdl emod_api.interventions.ccdl_viz emod_api.interventions.common emod_api.interventions.import_pressure emod_api.interventions.migration emod_api.interventions.node_multiplier emod_api.interventions.outbreak emod_api.interventions.simple_vaccine emod_api.interventions.utils emod_api.migration emod_api.migration.client emod_api.migration.client.client emod_api.migration.migration emod_api.schema emod_api.schema.dtk_post_process_schema emod_api.schema.get_schema emod_api.serialization emod_api.serialization.CensusAndModPop emod_api.serialization.SerializedPopulation emod_api.serialization.dtkFileSupport emod_api.serialization.dtkFileTools emod_api.serialization.dtkFileUtility emod_api.spatialreports emod_api.spatialreports.spatial emod_api.tabularoutput emod_api.weather emod_api.weather.weather emod_api.campaign emod_api.peek_camp emod_api.schema_to_class glossary resolving references... done writing... done copying images... [100%] images/fertility_over_time_doc.png copying TeX support files... copying TeX support files... done build succeeded. The LaTeX files are in _build/latex. Run 'make' in that directory to run these through (pdf)latex (use `make latexpdf' here to do that automatically). WARNING: Missing searchtools: /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/checkouts/latest/docs/_build/latex/_static/searchtools.js [rtd-command-info] start-time: 2022-08-02T20:38:17.985380Z, end-time: 2022-08-02T20:38:18.044252Z, duration: 0, exit-code: 0 cat latexmkrc $latex = 'latex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $pdflatex = 'pdflatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $lualatex = 'lualatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $xelatex = 'xelatex --no-pdf ' . $ENV{'LATEXOPTS'} . ' %O %S'; $makeindex = 'makeindex -s python.ist %O -o %D %S'; add_cus_dep( "glo", "gls", 0, "makeglo" ); sub makeglo { return system( "makeindex -s gglo.ist -o '$_[0].gls' '$_[0].glo'" ); } [rtd-command-info] start-time: 2022-08-02T20:38:18.326248Z, end-time: 2022-08-02T20:38:23.346984Z, duration: 5, exit-code: 0 latexmk -r latexmkrc -pdf -f -dvi- -ps- -jobname=institute-for-disease-modeling-emod-api -interaction=nonstopmode Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 4, chunk 1. Subroutine makeglo redefined at (eval 11) line 7, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 4, chunk 1. Latexmk: This is Latexmk, John Collins, 1 January 2015, version: 4.41. File::Glob::glob() will disappear in perl 5.30. Use File::Glob::bsd_glob() instead. at /usr/bin/latexmk line 7482. Rule 'pdflatex': Rules & subrules not known to be previously run: pdflatex Rule 'pdflatex': The following rules & subrules became out-of-date: 'pdflatex' ------------ Run number 1 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="institute-for-disease-modeling-emod-api" "emod-api-docs.tex"' ------------ Latexmk: applying rule 'pdflatex'... This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./emod-api-docs.tex LaTeX2e <2017-04-15> Babel <3.18> and hyphenation patterns for 84 language(s) loaded. 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(rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texmf/fonts/enc /dvips/tex-gyre/q-ec.enc}{/usr/share/texmf/fonts/enc/dvips/tex-gyre/q-ts1.enc}< /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb> Output written on institute-for-disease-modeling-emod-api.pdf (63 pages, 375615 bytes). Transcript written on institute-for-disease-modeling-emod-api.log. Latexmk: Index file 'institute-for-disease-modeling-emod-api.idx' was written Latexmk: Missing input file: 'institute-for-disease-modeling-emod-api.ind' from line 'No file institute-for-disease-modeling-emod-api.ind.' Latexmk: References changed. Latexmk: References changed. Latexmk: Log file says output to 'institute-for-disease-modeling-emod-api.pdf' Latexmk: Log file says output to 'institute-for-disease-modeling-emod-api.pdf' Latexmk: List of undefined refs and citations: Reference `emod_api.campaign:module-emod_api.campaign' on page 59 undefined on input line 6219 Reference `emod_api.channelreports.channels:module-emod_api.channelreports.channels' on page 59 undefined on input line 6221 Reference `emod_api.channelreports:module-emod_api.channelreports' on page 59 undefined on input line 6220 Reference `emod_api.config.default_from_schema:module-emod_api.config.default_from_schema' on page 59 undefined on input line 6223 Reference `emod_api.config.default_from_schema_no_validation:module-emod_api.config.default_from_schema_no_validation' on page 59 undefined on input line 6224 Reference `emod_api.config.dtk_post_process_adhocevents:module-emod_api.config.dtk_post_process_adhocevents' on page 59 undefined on input line 6225 Reference 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`emod_api.demographics.Demographics:module-emod_api.demographics.Demographics' on page 59 undefined on input line 6234 Reference `emod_api.demographics.DemographicsGenerator:module-emod_api.demographics.DemographicsGenerator' on page 59 undefined on input line 6236 Reference `emod_api.demographics.DemographicsInputDataParsers:module-emod_api.demographics.DemographicsInputDataParsers' on page 59 undefined on input line 6237 Reference `emod_api.demographics.DemographicsTemplates:module-emod_api.demographics.DemographicsTemplates' on page 59 undefined on input line 6238 Reference `emod_api.demographics.Node:module-emod_api.demographics.Node' on page 59 undefined on input line 6240 Reference `emod_api.demographics.PreDefinedDistributions:module-emod_api.demographics.PreDefinedDistributions' on page 59 undefined on input line 6241 Reference `emod_api.demographics.PropertiesAndAttributes:module-emod_api.demographics.PropertiesAndAttributes' on page 59 undefined on input line 6242 Reference `emod_api.demographics.Updateable:module-emod_api.demographics.Updateable' on page 59 undefined on input line 6243 Reference `emod_api.demographics.demographics_utils:module-emod_api.demographics.demographics_utils' on page 59 undefined on input line 6235 Reference `emod_api.demographics.grid_construction:module-emod_api.demographics.grid_construction' on page 59 undefined on input line 6239 Reference `emod_api.demographics:module-emod_api.demographics' on page 59 undefined on input line 6232 Reference `emod_api.interventions.ccdl:module-emod_api.interventions.ccdl' on page 59 undefined on input line 6245 Reference `emod_api.interventions.ccdl_viz:module-emod_api.interventions.ccdl_viz' on page 59 undefined on input line 6246 Reference `emod_api.interventions.common:module-emod_api.interventions.common' on page 59 undefined on input line 6247 Reference `emod_api.interventions.import_pressure:module-emod_api.interventions.import_pressure' on page 59 undefined on input line 6248 Reference `emod_api.interventions.migration:module-emod_api.interventions.migration' on page 59 undefined on input line 6249 Reference `emod_api.interventions.node_multiplier:module-emod_api.interventions.node_multiplier' on page 59 undefined on input line 6250 Reference `emod_api.interventions.outbreak:module-emod_api.interventions.outbreak' on page 59 undefined on input line 6251 Reference `emod_api.interventions.simple_vaccine:module-emod_api.interventions.simple_vaccine' on page 59 undefined on input line 6252 Reference `emod_api.interventions.utils:module-emod_api.interventions.utils' on page 59 undefined on input line 6253 Reference `emod_api.interventions:module-emod_api.interventions' on page 59 undefined on input line 6244 Reference `emod_api.migration.client.client:module-emod_api.migration.client.client' on page 59 undefined on input line 6256 Reference `emod_api.migration.client:module-emod_api.migration.client' on page 59 undefined on input line 6255 Reference `emod_api.migration.migration:module-emod_api.migration.migration' on page 59 undefined on input line 6257 Reference `emod_api.migration:module-emod_api.migration' on page 59 undefined on input line 6254 Reference `emod_api.peek_camp:module-emod_api.peek_camp' on page 59 undefined on input line 6258 Reference `emod_api.schema.dtk_post_process_schema:module-emod_api.schema.dtk_post_process_schema' on page 59 undefined on input line 6260 Reference `emod_api.schema.get_schema:module-emod_api.schema.get_schema' on page 59 undefined on input line 6261 Reference `emod_api.schema:module-emod_api.schema' on page 59 undefined on input line 6259 Reference `emod_api.schema_to_class:module-emod_api.schema_to_class' on page 59 undefined on input line 6262 Reference `emod_api.serialization.CensusAndModPop:module-emod_api.serialization.CensusAndModPop' on page 59 undefined on input line 6264 Reference `emod_api.serialization.SerializedPopulation:module-emod_api.serialization.SerializedPopulation' on page 59 undefined on input line 6268 Reference `emod_api.serialization.dtkFileSupport:module-emod_api.serialization.dtkFileSupport' on page 59 undefined on input line 6265 Reference `emod_api.serialization.dtkFileTools:module-emod_api.serialization.dtkFileTools' on page 59 undefined on input line 6266 Reference `emod_api.serialization.dtkFileUtility:module-emod_api.serialization.dtkFileUtility' on page 59 undefined on input line 6267 Reference `emod_api.serialization:module-emod_api.serialization' on page 59 undefined on input line 6263 Reference `emod_api.spatialreports.spatial:module-emod_api.spatialreports.spatial' on page 59 undefined on input line 6270 Reference `emod_api.spatialreports:module-emod_api.spatialreports' on page 59 undefined on input line 6269 Reference `emod_api.tabularoutput:module-emod_api.tabularoutput' on page 59 undefined on input line 6271 Reference `emod_api.weather.weather:module-emod_api.weather.weather' on page 59 undefined on input line 6273 Reference `emod_api.weather:module-emod_api.weather' on page 59 undefined on input line 6272 Reference `emod_api:module-emod_api' on page 59 undefined on input line 6218 Latexmk: Summary of warnings: Latex failed to resolve 56 reference(s) Rule 'makeindex institute-for-disease-modeling-emod-api.idx': File changes, etc: Non-existent destination files: 'institute-for-disease-modeling-emod-api.ind' ------------ Run number 1 of rule 'makeindex institute-for-disease-modeling-emod-api.idx' ------------ ------------ Running 'makeindex -s python.ist -o "institute-for-disease-modeling-emod-api.ind" "institute-for-disease-modeling-emod-api.idx"' ------------ Latexmk: applying rule 'makeindex institute-for-disease-modeling-emod-api.idx'... This is makeindex, version 2.15 [TeX Live 2017] (kpathsea + Thai support). Scanning style file ./python.ist.......done (7 attributes redefined, 0 ignored). Scanning input file institute-for-disease-modeling-emod-api.idx....done (512 entries accepted, 0 rejected). Sorting entries.......done (4914 comparisons). Generating output file institute-for-disease-modeling-emod-api.ind....done (959 lines written, 0 warnings). Output written in institute-for-disease-modeling-emod-api.ind. Transcript written in institute-for-disease-modeling-emod-api.ilg. Rule 'pdflatex': File changes, etc: Changed files, or newly in use since previous run(s): 'institute-for-disease-modeling-emod-api.aux' 'institute-for-disease-modeling-emod-api.ind' ------------ Run number 2 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="institute-for-disease-modeling-emod-api" "emod-api-docs.tex"' ------------ Latexmk: applying rule 'pdflatex'... 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Underfull \hbox (badness 10000) in paragraph at lines 260--263 []\T1/qtm/m/n/10 python -m Underfull \hbox (badness 10000) in paragraph at lines 264--267 []\T1/qtm/m/n/10 python -m [7] [8] Underfull \hbox (badness 10000) in paragraph at lines 529--532 []\T1/qtm/m/n/10 con-fig = json.load(open(^^Pdefault_config.json^^Q), ob-ject_h ook=s2c.ReadOnlyDict) os.remove( ^^Pde- Overfull \hbox (23.04372pt too wide) in paragraph at lines 538--538 []\T1/qtm/m/it/10 path_to_schema\T1/qtm/m/n/10 , Overfull \hbox (37.0137pt too wide) in paragraph at lines 538--538 \T1/qtm/m/it/10 schema_node=True\T1/qtm/m/n/10 , Overfull \hbox (13.74374pt too wide) in paragraph at lines 538--538 \T1/qtm/m/it/10 as_rod=False\T1/qtm/m/n/10 , Overfull \hbox (40.01373pt too wide) in paragraph at lines 538--538 \T1/qtm/m/it/10 put_filename=None\T1/txtt/m/n/10 )| Overfull \hbox (70.57379pt too wide) in paragraph at lines 553--553 \T1/qtm/m/it/10 put_filename=\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 default_config.j 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[]\T1/qtm/m/n/10 builder = s2c.SchemaConfigBuilder( [11] [12] [13] Overfull \hbox (88.84454pt too wide) in paragraph at lines 1211--1211 \T1/qtm/m/it/10 tional[][][[][]\T1/qtm/m/n/10 emod_api.demographics.PropertiesA ndAttributes.IndividualAttributes.MortalityDistribution[][]\T1/qtm/m/it/10 ] Overfull \hbox (6.90466pt too wide) in paragraph at lines 1267--1267 [][]\T1/qtm/m/n/10 emod_api.demographics.PropertiesAndAttributes.IndividualAttr ibutes.AgeDistribution[][], [14] [15] [16 <./fertility_over_time_doc.png>] (/usr/share/texlive/texmf-dist/tex/latex/txfonts/ts1txtt.fd) Overfull \hbox (377.44386pt too wide) in paragraph at lines 1601--1601 \T1/qtm/m/it/10 tional[][][[][]Union[][][emod_api.dtk_tools.demographics.Demogr aphicsGeneratorConcern.DemographicsGeneratorConcern, Overfull \hbox (349.59387pt too wide) in paragraph at lines 1601--1601 [][]\T1/qtm/m/it/10 List[][][emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern]]] Overfull \hbox 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aphicsGeneratorConcern.DemographicsGeneratorConcern, Overfull \hbox (255.09415pt too wide) in paragraph at lines 1781--1781 [][]\T1/qtm/m/it/10 List[][][emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern]]] [19] Overfull \hbox (34.91383pt too wide) in paragraph at lines 1869--1869 \T1/qtm/m/it/10 res=0.008333333333333333\T1/txtt/m/n/10 )| Overfull \hbox (13.9139pt too wide) in paragraph at lines 1881--1881 \T1/qtm/m/it/10 res=0.008333333333333333\T1/txtt/m/n/10 )| Overfull \hbox (34.55377pt too wide) in paragraph at lines 1887--1887 \T1/qtm/m/it/10 tra_data_columns=[]\T1/qtm/m/n/10 , Overfull \hbox (66.41374pt too wide) in paragraph at lines 1887--1887 \T1/qtm/m/it/10 res=0.008333333333333333\T1/txtt/m/n/10 )| Underfull \hbox (badness 10000) in paragraph at lines 1933--1936 []\T1/qtm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- [20] Underfull \hbox (badness 10000) in paragraph at lines 1963--1966 []\T1/qtm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 1986--1989 []\T1/qtm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- [21] Overfull \hbox (43.13435pt too wide) in paragraph at lines 2151--2151 \T1/qtm/m/it/10 tional[][][[][]\T1/qtm/m/n/10 emod_api.demographics.PropertiesA ndAttributes.IndividualAttributes[][]\T1/qtm/m/it/10 ] Overfull \hbox (43.93436pt too wide) in paragraph at lines 2151--2151 \T1/qtm/m/it/10 tional[][][[][]\T1/qtm/m/n/10 emod_api.demographics.PropertiesA ndAttributes.IndividualProperties[][]\T1/qtm/m/it/10 ] Overfull \hbox (23.48436pt too wide) in paragraph at lines 2151--2151 \T1/qtm/m/it/10 tional[][][[][]\T1/qtm/m/n/10 emod_api.demographics.PropertiesA ndAttributes.NodeAttributes[][]\T1/qtm/m/it/10 ] [22] Overfull \hbox (221.57382pt too wide) in paragraph at lines 2330--2330 \T1/qtm/m/it/10 tional[][][[][]\T1/qtm/m/n/10 emod_api.demographics.PropertiesA ndAttributes.IndividualProperty[][]\T1/qtm/m/it/10 ] [23] Overfull \hbox (29.17384pt too wide) in paragraph at lines 2363--2363 []\T1/qtm/m/it/10 age_distribution_flag=None\T1/qtm/m/n/10 , Overfull \hbox (14.17384pt too wide) in paragraph at lines 2363--2363 \T1/qtm/m/it/10 age_distribution1=None\T1/qtm/m/n/10 , Overfull \hbox (14.17384pt too wide) in paragraph at lines 2363--2363 \T1/qtm/m/it/10 age_distribution2=None\T1/qtm/m/n/10 , Overfull \hbox (9.17384pt too wide) in paragraph at lines 2363--2363 \T1/qtm/m/it/10 age_distribution=None\T1/qtm/m/n/10 , Overfull \hbox (36.28386pt too wide) in paragraph at lines 2363--2363 \T1/qtm/m/it/10 lence_distribution_flag=None\T1/qtm/m/n/10 , Overfull \hbox (21.28386pt too wide) in paragraph at lines 2363--2363 \T1/qtm/m/it/10 lence_distribution1=None\T1/qtm/m/n/10 , Overfull \hbox (21.28386pt too wide) in paragraph at lines 2363--2363 \T1/qtm/m/it/10 lence_distribution2=None\T1/qtm/m/n/10 , Overfull \hbox (30.18385pt too wide) in paragraph at lines 2363--2363 \T1/qtm/m/it/10 nity_distribution_flag=None\T1/qtm/m/n/10 , Overfull \hbox (15.18385pt too wide) in paragraph at lines 2363--2363 \T1/qtm/m/it/10 nity_distribution1=None\T1/qtm/m/n/10 , Overfull \hbox (15.18385pt too wide) in paragraph at lines 2363--2363 \T1/qtm/m/it/10 nity_distribution2=None\T1/qtm/m/n/10 , Overfull \hbox (30.18385pt too wide) in paragraph at lines 2363--2363 \T1/qtm/m/it/10 risk_distribution_flag=None\T1/qtm/m/n/10 , Overfull \hbox (15.18385pt too wide) in paragraph at lines 2363--2363 \T1/qtm/m/it/10 risk_distribution1=None\T1/qtm/m/n/10 , Overfull \hbox (15.18385pt too wide) in paragraph at lines 2363--2363 \T1/qtm/m/it/10 risk_distribution2=None\T1/qtm/m/n/10 , Overfull \hbox (89.17386pt too wide) in paragraph at lines 2363--2363 \T1/qtm/m/it/10 tion_heterogeneity_distribution_flag=None\T1/qtm/m/n/10 , Overfull \hbox (74.17386pt too wide) in paragraph at lines 2363--2363 \T1/qtm/m/it/10 tion_heterogeneity_distribution1=None\T1/qtm/m/n/10 , Overfull \hbox (74.17386pt too wide) in paragraph at lines 2363--2363 \T1/qtm/m/it/10 tion_heterogeneity_distribution2=None\T1/qtm/m/n/10 , Overfull \hbox (5.18385pt too wide) in paragraph at lines 2363--2363 \T1/qtm/m/it/10 ity_distribution=None\T1/qtm/m/n/10 , Overfull \hbox (5.18385pt too wide) in paragraph at lines 2363--2363 \T1/qtm/m/it/10 ity_distribution=None\T1/qtm/m/n/10 , Overfull \hbox (29.62386pt too wide) in paragraph at lines 2363--2363 \T1/qtm/m/it/10 ity_distribution_male=None\T1/qtm/m/n/10 , Overfull \hbox (36.54384pt too wide) in paragraph at lines 2363--2363 \T1/qtm/m/it/10 ity_distribution_female=None\T1/qtm/m/n/10 , Overfull \hbox (7.93384pt too wide) in paragraph at lines 2363--2363 \T1/qtm/m/it/10 ity_distribution=None\T1/txtt/m/n/10 )| [24] Overfull \hbox (10.98395pt too wide) in paragraph at lines 2462--2462 \T1/qtm/m/it/10 tial_vectors_per_species=None\T1/qtm/m/n/10 , [25] [26] Underfull \hbox (badness 5578) in paragraph at lines 2681--2684 []\T1/qtm/m/n/10 Cre-ate a static de-mo-graph-ics based on the de-mo-graph-ics file spec-i-fied in the con-fig file of the [27] [28] Overfull \hbox (5.21407pt too wide) in paragraph at lines 2911--2911 \T1/qtm/m/it/10 Node_Selection_Type=\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 DISTANCE_ ONLY\TS1/qtm/m/it/10 '\T1/qtm/m/n/10 , [29] [30] Underfull \hbox (badness 10000) in paragraph at lines 3176--3178 []\T1/txtt/bx/n/10 IP. \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 Target_Property_Value. The value part of the new key[]value pair Underfull \hbox (badness 10000) in paragraph at lines 3188--3190 []\T1/txtt/bx/n/10 Target_Property_Value. \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 Dail y_Probability. The daily probability that Underfull \hbox (badness 10000) in paragraph at lines 3192--3194 []\T1/txtt/bx/n/10 Daily_Probability. \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 Maximum_ Duration. The maximum amount of time Underfull \hbox (badness 10000) in paragraph at lines 3192--3194 \T1/txtt/m/sl/10 individuals have to move to a new group. This timing works in Underfull \hbox (badness 10000) in paragraph at lines 3196--3198 []\T1/txtt/bx/n/10 group. \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 Revert. The number o f days before an individual moves back to Underfull \hbox (badness 10000) in paragraph at lines 3200--3202 []\T1/txtt/bx/n/10 policy. \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 Intervention_Name. Optional Intervention_Name. Useful if Underfull \hbox (badness 10000) in paragraph at lines 3208--3210 []\T1/txtt/bx/n/10 expired. \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 Event_Trigger_Expi red. Optional broadcast trigger to be [31] [32] [33] Underfull \hbox (badness 10000) in paragraph at lines 3515--3517 []\T1/txtt/bx/n/10 "Delay_Period_Exponential" \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 but without the distribution, which is [34] Overfull \hbox (2.75383pt too wide) in paragraph at lines 3543--3543 \T1/qtm/m/it/10 ip_targeting=None\T1/qtm/m/n/10 , Overfull \hbox (10.51382pt too wide) in paragraph at lines 3543--3543 \T1/qtm/m/it/10 get_age_max=45625\T1/qtm/m/n/10 , Overfull \hbox (29.36382pt too wide) in paragraph at lines 3543--3543 \T1/qtm/m/it/10 get_residents_only=False\T1/qtm/m/n/10 , Overfull \hbox (24.73378pt too wide) in paragraph at lines 3543--3543 \T1/qtm/m/it/10 check_at_trigger=False\T1/txtt/m/n/10 )| Underfull \hbox (badness 10000) in paragraph at lines 3569--3571 []\T1/txtt/bx/n/10 "Delay_Period_Exponential" \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 but without the distribution, which is [35] [36] [37] [38] [39] Underfull \hbox (badness 10000) in paragraph at lines 4055--4060 []\T1/qtm/m/n/10 {^^PDu-ra-tion_Before_Leaving_Distribution^^Q:^^QGAUSSIAN_DIST RIBUTION^^Q, Underfull \hbox (badness 10000) in paragraph at lines 4055--4060 \T1/qtm/m/n/10 ^^PDu-ra-tion_Before_Leaving_Gaussian_Mean^^Q: 14, ^^PDu- Underfull \hbox (badness 10000) in paragraph at lines 4055--4060 \T1/qtm/m/n/10 ra-tion_Before_Leaving_Gaussian_Std_Dev^^Q 3} {^^PDu-ra- Underfull \hbox (badness 10000) in paragraph at lines 4055--4060 \T1/qtm/m/n/10 tion_Before_Leaving_Distribution^^Q:^^QPOISSON_DISTRIBUTION^^Q, ^^PDu-ra- [40] Underfull \hbox (badness 10000) in paragraph at lines 4071--4075 []\T1/qtm/m/n/10 {^^PDu-ra-tion_At_Node_Distribution^^Q:^^QGAUSSIAN_DISTRIBUTIO N^^Q, ^^PDu-ra- Underfull \hbox (badness 10000) in paragraph at lines 4071--4075 \T1/qtm/m/n/10 tion_At_Node_Gaussian_Mean^^Q: 14, ^^PDu-ra-tion_At_Node_Gaussia n_Std_Dev^^Q Underfull \hbox (badness 10000) in paragraph at lines 4071--4075 \T1/qtm/m/n/10 3} {^^PDu-ra-tion_At_Node_Distribution^^Q:^^QPOISSON_DISTRIBUTIO N^^Q, ^^PDu-ra- Overfull \hbox (17.85501pt too wide) in paragraph at lines 4127--4132 \T1/qtm/m/n/10 from emod_api im-port cam-paign as camp dan = {^^PDu-ra-tion_At_ Node_Distribution^^Q:^^QPOISSON_DISTRIBUTION^^Q, Overfull \hbox (55.02502pt too wide) in paragraph at lines 4127--4132 \T1/qtm/m/n/10 ^^PDu-ra-tion_At_Node_Poisson_Mean^^Q 30} dbl = {^^PDu-ra-tion_B efore_Leaving_Distribution^^Q:^^QGAUSSIAN_DISTRIBUTION^^Q, Underfull \hbox (badness 10000) in paragraph at lines 4133--4139 []\T1/qtm/m/n/10 du-ra- ! LaTeX Error: Too deeply nested. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.4162 ...{CONST(ANT)}] \leavevmode\begin{itemize} [41] [42] [43] [44] Underfull \hbox (badness 10000) in paragraph at lines 4550--4554 []\T1/qtm/m/n/10 EMOD/DTK for-mat mi-gra-tion files (and as-so-ci-ated meta-dat a files) can be writ-ten with mi-gra- [45] Overfull \hbox (57.54393pt too wide) in paragraph at lines 4850--4850 [][]\T1/qtm/m/it/10 emod_api.migration.migration.Migration[][]| [46] [47] [48] [49] [50] [51] [52] [53] [54] Underfull \hbox (badness 6842) in paragraph at lines 5974--5977 []\T1/qtm/m/n/10 Set the (path to) the schema file. And re-set all cam-paign va ri-ables. This is es-sen-tially a [55] [56] Chapter 4. [57] [58] Overfull \hbox (29.87175pt too wide) in paragraph at lines 6224--6225 []\T1/txtt/m/n/10 emod_api.config.default_from_schema_no_validation\T1/qtm/m/n/ 10 , Overfull \hbox (3.62183pt too wide) in paragraph at lines 6225--6226 []\T1/txtt/m/n/10 emod_api.config.dtk_post_process_adhocevents\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 6226--6227 []\T1/txtt/m/n/10 emod_api.config.dtk_pre_process_adhocevents\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 6236--6237 []\T1/txtt/m/n/10 emod_api.demographics.DemographicsGenerator\T1/qtm/m/n/10 , Overfull \hbox (35.12173pt too wide) in paragraph at lines 6237--6238 []\T1/txtt/m/n/10 emod_api.demographics.DemographicsInputDataParsers\T1/qtm/m/n /10 , Underfull \hbox (badness 10000) in paragraph at lines 6238--6239 []\T1/txtt/m/n/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 , Overfull \hbox (8.87181pt too wide) in paragraph at lines 6241--6242 []\T1/txtt/m/n/10 emod_api.demographics.PreDefinedDistributions\T1/qtm/m/n/10 , Overfull \hbox (8.87181pt too wide) in paragraph at lines 6242--6243 []\T1/txtt/m/n/10 emod_api.demographics.PropertiesAndAttributes\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 6268--6269 []\T1/txtt/m/n/10 emod_api.serialization.SerializedPopulation\T1/qtm/m/n/10 , [59] (./institute-for-disease-modeling-emod-api.ind [60] Overfull \hbox (85.18242pt too wide) in paragraph at lines 8--10 []\T1/txtt/m/n/10 add() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.P ropertiesAndAttributes.IndividualProperties Underfull \hbox (badness 10000) in paragraph at lines 11--13 []\T1/txtt/m/n/10 add_migration_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Overfull \hbox (137.68227pt too wide) in paragraph at lines 13--15 []\T1/txtt/m/n/10 add_parameter() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demo graphics.PropertiesAndAttributes.IndividualProperties Overfull \hbox (49.44226pt too wide) in paragraph at lines 15--17 []\T1/txtt/m/n/10 add_parameter() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demo graphics.Updateable.Updateable Underfull \hbox (badness 10000) in paragraph at lines 17--19 []\T1/txtt/m/n/10 AddAgeDependentTransmission() Overfull \hbox (33.46252pt too wide) in paragraph at lines 17--19 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 19--21 []\T1/txtt/m/n/10 AddIndividualPropertyAndHINT() Overfull \hbox (33.46252pt too wide) in paragraph at lines 19--21 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 21--23 []\T1/txtt/m/n/10 AgeStructureUNWPP() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Overfull \hbox (15.1475pt too wide) in paragraph at lines 21--23 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 23--25 []\T1/txtt/m/n/10 AgesYears \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration. migration.Migration Overfull \hbox (31.54231pt too wide) in paragraph at lines 26--28 []\T1/txtt/m/n/10 append() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializati on.dtkFileTools.DtkFile.Contents Overfull \hbox (26.68231pt too wide) in paragraph at lines 28--30 []\T1/txtt/m/n/10 append() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializati on.dtkFileTools.DtkFile.Objects Underfull \hbox (badness 10000) in paragraph at lines 30--32 []\T1/txtt/m/n/10 application() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (8.10747pt too wide) in paragraph at lines 30--32 \T1/qtm/m/it/10 emod_api.config.dtk_post_process_adhocevents\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 32--34 []\T1/txtt/m/n/10 application() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (4.56746pt too wide) in paragraph at lines 32--34 \T1/qtm/m/it/10 emod_api.config.dtk_pre_process_adhocevents\T1/qtm/m/n/10 ), 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), Underfull \hbox (badness 10000) in paragraph at lines 42--44 []\T1/txtt/m/n/10 arcsec_to_deg() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (16.85251pt too wide) in paragraph at lines 42--44 \T1/qtm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/qtm/m/n/10 ), Overfull \hbox (51.92223pt too wide) in paragraph at lines 44--46 []\T1/txtt/m/n/10 as_dataframe() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.chann elreports.channels.ChannelReport Overfull \hbox (30.00221pt too wide) in paragraph at lines 46--48 []\T1/txtt/m/n/10 as_dictionary() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.chan nelreports.channels.Channel Overfull \hbox (26.10222pt too wide) in paragraph at lines 48--50 []\T1/txtt/m/n/10 as_dictionary() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.chan nelreports.channels.Header Underfull \hbox (badness 10000) in paragraph at lines 54--56 []\T1/txtt/m/n/10 author \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serialization .dtkFileTools.DtkFile Underfull \hbox (badness 10000) in paragraph at lines 61--63 []\T1/txtt/m/n/10 BaseInputFile \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 61--63 \T1/qtm/m/it/10 emod_api.demographics.BaseInputFile\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 63--64 []\T1/txtt/m/n/10 basicNode() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 65--67 []\T1/txtt/m/n/10 BroadcastEvent() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 67--69 []\T1/txtt/m/n/10 BroadcastEventToOtherNodes() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (4.13228pt too wide) in paragraph at lines 70--72 []\T1/txtt/m/n/10 byte_count \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializa tion.dtkFileTools.DtkFile Underfull \hbox (badness 10000) in paragraph at lines 75--77 []\T1/txtt/m/n/10 change_individual_property() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule [61] Underfull 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(\T1/qtm/m/it/10 emod_api.channelrepo rts.channels.ChannelReport Overfull \hbox (9.38226pt too wide) in paragraph at lines 92--94 []\T1/txtt/m/n/10 chunk_count \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFile Overfull \hbox (9.38226pt too wide) in paragraph at lines 94--96 []\T1/txtt/m/n/10 chunk_sizes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFile Underfull \hbox (badness 10000) in paragraph at lines 96--98 []\T1/txtt/m/n/10 chunks \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serialization .dtkFileTools.DtkFile Overfull \hbox (29.63231pt too wide) in paragraph at lines 98--100 []\T1/txtt/m/n/10 compress() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializa tion.dtkFileSupport.EllZeeFour Overfull \hbox (13.76231pt too wide) in paragraph at lines 100--102 []\T1/txtt/m/n/10 compress() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializa tion.dtkFileSupport.Snappy Overfull \hbox (43.15228pt too wide) in paragraph at lines 102--104 []\T1/txtt/m/n/10 compress() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializa tion.dtkFileSupport.Uncompressed Underfull \hbox (badness 10000) in paragraph at lines 104--106 []\T1/txtt/m/n/10 compress() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (4.13228pt too wide) in paragraph at lines 106--108 []\T1/txtt/m/n/10 compressed \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializa tion.dtkFileTools.DtkFile Overfull \hbox (9.38226pt too wide) in paragraph at lines 108--110 []\T1/txtt/m/n/10 compression \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFile Underfull \hbox (badness 10000) in paragraph at lines 110--112 []\T1/txtt/m/n/10 ConstantDistribution \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (14.58746pt too wide) in paragraph at lines 110--112 \T1/qtm/m/it/10 emod_api.demographics.PreDefinedDistributions\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 112--114 []\T1/txtt/m/n/10 construct() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 112--114 \T1/qtm/m/it/10 emod_api.demographics.grid_construction\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 114--116 []\T1/txtt/m/n/10 ConstructNodesFromDataFrame() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (46.2575pt too wide) in paragraph at lines 114--116 \T1/qtm/m/it/10 emod_api.demographics.DemographicsInputDataParsers\T1/qtm/m/n/1 0 ), Overfull \hbox (92.52237pt too wide) in paragraph at lines 116--118 []\T1/txtt/m/n/10 copy() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics. PreDefinedDistributions.ConstantDistribution Underfull \hbox (badness 10000) in paragraph at lines 118--120 []\T1/txtt/m/n/10 creation_date \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weathe r.weather.Metadata Underfull \hbox (badness 10000) in paragraph at lines 120--122 []\T1/txtt/m/n/10 creation_date \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weathe r.weather.Weather Underfull \hbox (badness 10000) in paragraph at lines 128--130 []\T1/txtt/m/n/10 data \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatialreports. spatial.SpatialReport Underfull \hbox (badness 10000) in paragraph at lines 131--132 []\T1/txtt/m/n/10 data \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather.weather .WeatherNode prop- Overfull \hbox (1.23224pt too wide) in paragraph at lines 132--134 []\T1/txtt/m/n/10 datavalue_count \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weat her.weather.Metadata Overfull \hbox (13.67229pt too wide) in paragraph at lines 138--140 []\T1/txtt/m/n/10 DatavalueCount \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migra tion.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 145--146 []\T1/txtt/m/n/10 decorate_actual_iv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 146--148 []\T1/txtt/m/n/10 decorate_actual_iv_impl() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (14.49223pt too wide) in paragraph at lines 148--150 []\T1/txtt/m/n/10 default_population \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.d emographics.Node.Node Overfull \hbox (15.1475pt too wide) in paragraph at lines 150--152 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 152--154 []\T1/txtt/m/n/10 DelayedIntervention() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 154--156 []\T1/txtt/m/n/10 Demographics \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 154--156 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 156--158 []\T1/txtt/m/n/10 DemographicsGenerator \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class i n Overfull \hbox (16.85251pt too wide) in paragraph at lines 156--158 \T1/qtm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 158--160 []\T1/txtt/m/n/10 DemographicsOverlay \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 158--160 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 160--162 []\T1/txtt/m/n/10 DemographicsType \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (16.85251pt too wide) in paragraph at lines 160--162 \T1/qtm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 162--164 []\T1/txtt/m/n/10 do_mapping_from_events() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Overfull \hbox (4.56746pt too wide) in paragraph at lines 162--164 \T1/qtm/m/it/10 emod_api.config.dtk_pre_process_adhocevents\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 165--167 []\T1/txtt/m/n/10 dtk_to_schema() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (36.17227pt too wide) in paragraph at lines 167--169 []\T1/txtt/m/n/10 dtk_version \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelr eports.channels.ChannelReport Overfull \hbox (5.10228pt too wide) in paragraph at lines 169--171 []\T1/txtt/m/n/10 dtk_version \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelr eports.channels.Header [62] Underfull \hbox (badness 10000) in paragraph at lines 172--174 []\T1/txtt/m/n/10 DtkFile.Contents \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 174--176 []\T1/txtt/m/n/10 DtkFile.Objects \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (3.18729pt too wide) in paragraph at lines 176--178 []\T1/txtt/m/n/10 DtkFileV1 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.s erialization.dtkFileTools\T1/qtm/m/n/10 ), Overfull \hbox (3.18729pt too wide) in paragraph at lines 178--180 []\T1/txtt/m/n/10 DtkFileV2 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.s erialization.dtkFileTools\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 180--182 []\T1/txtt/m/n/10 DtkFileV2.NodesV2 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (3.18729pt too wide) in paragraph at lines 182--184 []\T1/txtt/m/n/10 DtkFileV3 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.s erialization.dtkFileTools\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 184--186 []\T1/txtt/m/n/10 DtkFileV3.NodesV3 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (3.18729pt too wide) in paragraph at lines 186--188 []\T1/txtt/m/n/10 DtkFileV4 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.s erialization.dtkFileTools\T1/qtm/m/n/10 ), Overfull \hbox (3.18729pt too wide) in paragraph at lines 188--190 []\T1/txtt/m/n/10 DtkHeader \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.s erialization.dtkFileTools\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 190--192 []\T1/txtt/m/n/10 duplicate_nodeID_check() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Overfull \hbox (46.2575pt too wide) in paragraph at lines 190--192 \T1/qtm/m/it/10 emod_api.demographics.DemographicsInputDataParsers\T1/qtm/m/n/1 0 ), Overfull \hbox (19.2323pt too wide) in paragraph at lines 195--197 []\T1/txtt/m/n/10 EllZeeFour \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api. serialization.dtkFileSupport\T1/qtm/m/n/10 ), Overfull \hbox (27.37175pt too wide) in paragraph at lines 209--210 []\T1/txtt/m/n/10 emod_api.config.default_from_schema_no_validation Overfull \hbox (1.12183pt too wide) in paragraph at lines 211--212 []\T1/txtt/m/n/10 emod_api.config.dtk_post_process_adhocevents 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ration.Migration Underfull \hbox (badness 10000) in paragraph at lines 320--322 []\T1/txtt/m/n/10 FEMALE \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.mig ration.Migration Underfull \hbox (badness 10000) in paragraph at lines 322--324 []\T1/txtt/m/n/10 fill_nodes_legacy() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Overfull \hbox (46.2575pt too wide) in paragraph at lines 322--324 \T1/qtm/m/it/10 emod_api.demographics.DemographicsInputDataParsers\T1/qtm/m/n/1 0 ), Overfull \hbox (31.2124pt too wide) in paragraph at lines 326--328 []\T1/txtt/m/n/10 find() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule emod_api.se rialization.SerializedPopulation\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 328--330 []\T1/txtt/m/n/10 flattenConfig() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (76.32239pt too wide) in paragraph at lines 330--332 []\T1/txtt/m/n/10 flush() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializatio n.SerializedPopulation.SerializedPopulation Underfull \hbox (badness 10000) in paragraph at lines 334--336 []\T1/txtt/m/n/10 from_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 334--336 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 339--341 []\T1/txtt/m/n/10 from_dataframe() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (16.85251pt too wide) in paragraph at lines 339--341 \T1/qtm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 341--343 []\T1/txtt/m/n/10 from_demog_and_param_gravity() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 in mod-ule Overfull \hbox (113.91234pt too wide) in paragraph at lines 345--347 []\T1/txtt/m/n/10 from_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demograp hics.PropertiesAndAttributes.IndividualAttributes Overfull \hbox (180.06232pt too wide) in 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in paragraph at lines 357--359 []\T1/txtt/m/n/10 from_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 357--359 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 359--361 []\T1/txtt/m/n/10 from_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (16.85251pt too wide) in paragraph at lines 359--361 \T1/qtm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 361--362 []\T1/txtt/m/n/10 from_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 362--364 []\T1/txtt/m/n/10 from_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 362--364 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 364--365 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GenderDataType \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migra tion.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 376--378 []\T1/txtt/m/n/10 generate_demographics() Overfull \hbox (115.38252pt too wide) in paragraph at lines 376--378 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.DemographicsGenerator.Dem ographicsGenerator [64] Overfull \hbox (69.64224pt too wide) in paragraph at lines 378--380 []\T1/txtt/m/n/10 generate_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demo graphics.BaseInputFile.BaseInputFile Overfull \hbox (73.8823pt too wide) in paragraph at lines 380--382 []\T1/txtt/m/n/10 generate_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demo graphics.Demographics.Demographics Overfull \hbox (85.3922pt too wide) in paragraph at lines 382--384 []\T1/txtt/m/n/10 generate_headers() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.d emographics.BaseInputFile.BaseInputFile Underfull \hbox (badness 10000) in paragraph at lines 384--386 []\T1/txtt/m/n/10 generate_metadata() Overfull \hbox (115.38252pt too wide) in paragraph at lines 384--386 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.DemographicsGenerator.Dem ographicsGenerator Overfull \hbox (161.05228pt too wide) in paragraph at lines 386--388 []\T1/txtt/m/n/10 generate_nodes() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.dem ographics.DemographicsGenerator.DemographicsGenerator Underfull \hbox (badness 10000) in paragraph at lines 390--392 []\T1/txtt/m/n/10 get_bbox() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 390--392 \T1/qtm/m/it/10 emod_api.demographics.grid_construction\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 392--394 []\T1/txtt/m/n/10 get_class_with_defaults() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 394--396 []\T1/txtt/m/n/10 get_colour_from_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule Overfull \hbox (44.89249pt too wide) in paragraph at lines 396--398 \T1/qtm/m/it/10 ule emod_api.config.default_from_schema_no_validation\T1/qtm/m/ n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 398--400 []\T1/txtt/m/n/10 get_default_config_from_schema() \T1/qtm/m/n/10 (\T1/qtm/m/it /10 in mod-ule Overfull \hbox (31.00249pt too wide) in paragraph at lines 398--400 \T1/qtm/m/it/10 emod_api.config.default_from_schema_no_validation\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 400--402 []\T1/txtt/m/n/10 get_default_for_complex_type() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 403--405 []\T1/txtt/m/n/10 get_fert_dist() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 403--405 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 405--407 []\T1/txtt/m/n/10 get_fert_dist_from_rates() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 405--407 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 407--409 []\T1/txtt/m/n/10 get_grid_cell_id() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 407--409 \T1/qtm/m/it/10 emod_api.demographics.grid_construction\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 410--412 []\T1/txtt/m/n/10 get_next_individual_suid() Overfull \hbox (77.9025pt too wide) in paragraph at lines 410--412 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serialization.SerializedPopulation.Ser ializedPopulation Underfull \hbox (badness 10000) in paragraph at lines 412--414 []\T1/txtt/m/n/10 get_next_infection_suid() Overfull \hbox (77.9025pt too wide) in paragraph at lines 412--414 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serialization.SerializedPopulation.Ser ializedPopulation Underfull \hbox (badness 10000) in paragraph at lines 414--416 []\T1/txtt/m/n/10 get_nickname_from_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (47.63237pt too wide) in paragraph at lines 416--418 []\T1/txtt/m/n/10 get_node() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demograph ics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 418--420 []\T1/txtt/m/n/10 get_node_ids_from_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 418--420 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Overfull \hbox (34.67223pt too wide) in paragraph at lines 420--422 []\T1/txtt/m/n/10 get_node_offsets() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.m igration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 422--424 []\T1/txtt/m/n/10 get_node_pops_from_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 422--424 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 424--426 []\T1/txtt/m/n/10 get_parameters() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 424--426 \T1/qtm/m/it/10 emod_api.serialization.SerializedPopulation\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 429--431 []\T1/txtt/m/n/10 get_shape_from_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod -ule Underfull \hbox (badness 10000) in paragraph at lines 432--434 []\T1/txtt/m/n/10 get_waning_from_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 434--436 []\T1/txtt/m/n/10 get_xpix_ypix() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (9.92235pt too wide) in paragraph at lines 441--443 []\T1/txtt/m/n/10 header \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelreport s.channels.ChannelReport Underfull \hbox (badness 10000) in paragraph at lines 443--445 []\T1/txtt/m/n/10 header \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serialization .dtkFileTools.DtkFile Underfull \hbox (badness 5985) in paragraph at lines 452--454 []\T1/txtt/m/n/10 id \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatialreports.sp atial.SpatialNode prop- Underfull \hbox (badness 10000) in paragraph at lines 455--457 []\T1/txtt/m/n/10 id_reference \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather .weather.Metadata Underfull \hbox (badness 10000) in paragraph at lines 457--459 []\T1/txtt/m/n/10 id_reference \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather .weather.Weather Overfull \hbox (34.6714pt too wide) in paragraph at lines 459--461 []\T1/txtt/m/n/10 IDREF_GRUMP1DEGREE \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.m igration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 461--463 []\T1/txtt/m/n/10 IDREF_GRUMP2PT5ARCMIN Underfull \hbox (badness 10000) in paragraph at lines 461--463 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 463--465 []\T1/txtt/m/n/10 IDREF_GRUMP30ARCSEC Underfull \hbox (badness 10000) in paragraph at lines 463--465 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migration.Migration Overfull \hbox (3.1715pt too wide) in paragraph at lines 465--467 []\T1/txtt/m/n/10 IDREF_LEGACY \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migrati on.migration.Migration [65] Underfull \hbox (badness 10000) in paragraph at lines 469--471 []\T1/txtt/m/n/10 IndividualAttributes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (14.13748pt too wide) in paragraph at lines 469--471 \T1/qtm/m/it/10 emod_api.demographics.PropertiesAndAttributes\T1/qtm/m/n/10 ), Overfull \hbox (14.13748pt too wide) in paragraph at lines 471--473 \T1/qtm/m/it/10 emod_api.demographics.PropertiesAndAttributes\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 473--475 []\T1/txtt/m/n/10 IndividualAttributes.FertilityDistribution Overfull \hbox (48.58748pt too wide) in paragraph at lines 473--475 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.demographics.PropertiesAndAtt ributes\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 475--477 []\T1/txtt/m/n/10 IndividualAttributes.MortalityDistribution Overfull \hbox (48.58748pt too wide) in paragraph at lines 475--477 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.demographics.PropertiesAndAtt ributes\T1/qtm/m/n/10 ), Overfull \hbox (16.87178pt too wide) in paragraph at lines 477--479 []\T1/txtt/m/n/10 IndividualAttributes.SusceptibilityDistribution Overfull \hbox (48.58748pt too wide) in paragraph at lines 477--479 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.demographics.PropertiesAndAtt ributes\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 479--481 []\T1/txtt/m/n/10 IndividualProperties \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (14.13748pt too wide) in paragraph at lines 479--481 \T1/qtm/m/it/10 emod_api.demographics.PropertiesAndAttributes\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 481--483 []\T1/txtt/m/n/10 IndividualProperty \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (14.13748pt too wide) in paragraph at lines 481--483 \T1/qtm/m/it/10 emod_api.demographics.PropertiesAndAttributes\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 483--485 []\T1/txtt/m/n/10 infer_natural_mortality() Overfull \hbox (33.46252pt too wide) in paragraph at lines 483--485 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 485--487 []\T1/txtt/m/n/10 init_resolution_from_file() Underfull \hbox (badness 10000) in paragraph at lines 485--487 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Node.Node class Underfull \hbox (badness 10000) in paragraph at lines 487--489 []\T1/txtt/m/n/10 InitAgeUniform() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 487--489 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 489--491 []\T1/txtt/m/n/10 InitPrevUniform() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 489--491 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 491--493 []\T1/txtt/m/n/10 InitRiskExponential() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 491--493 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 493--495 []\T1/txtt/m/n/10 InitRiskLogNormal() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Overfull \hbox (15.1475pt too wide) in paragraph at lines 493--495 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 495--497 []\T1/txtt/m/n/10 InitRiskUniform() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 495--497 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 497--499 []\T1/txtt/m/n/10 InitSusceptConstant() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 497--499 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Overfull \hbox (29.42224pt too wide) in paragraph at lines 499--501 []\T1/txtt/m/n/10 InterpolationType \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.mi gration.migration.Migration Overfull \hbox (2.72234pt too wide) in paragraph at lines 501--503 []\T1/txtt/m/n/10 interval \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatialrepo rts.spatial.SpatialReport Overfull \hbox (3.1715pt too wide) in paragraph at lines 503--505 []\T1/txtt/m/n/10 INTERVENTION \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migrati on.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 510--512 []\T1/txtt/m/n/10 lat_lon_from_nodeid() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 513--515 []\T1/txtt/m/n/10 LINEAR_INTERPOLATION Underfull \hbox (badness 10000) in paragraph at lines 513--515 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 515--517 []\T1/txtt/m/n/10 load_default_config_as_rod() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (31.00249pt too wide) in paragraph at lines 515--517 \T1/qtm/m/it/10 emod_api.config.default_from_schema_no_validation\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 517--519 []\T1/txtt/m/n/10 LOCAL \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migr ation.Migration at- Underfull \hbox (badness 10000) in paragraph at lines 520--522 []\T1/txtt/m/n/10 lon_lat_2_point() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 520--522 \T1/qtm/m/it/10 emod_api.demographics.grid_construction\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 525--527 []\T1/txtt/m/n/10 make_config_from_poi() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod -ule Underfull \hbox (badness 10000) in paragraph at lines 525--527 \T1/qtm/m/it/10 emod_api.config.from_poi_and_binary\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 527--529 []\T1/txtt/m/n/10 make_config_from_poi_and_config_dict() \T1/qtm/m/n/10 (\T1/qt m/m/it/10 in Overfull \hbox (3.8775pt too wide) in paragraph at lines 527--529 \T1/qtm/m/it/10 mod-ule emod_api.config.from_poi_and_binary\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 529--531 []\T1/txtt/m/n/10 make_config_from_poi_and_config_file() \T1/qtm/m/n/10 (\T1/qt m/m/it/10 in Overfull \hbox (3.8775pt too wide) in paragraph at lines 529--531 \T1/qtm/m/it/10 mod-ule emod_api.config.from_poi_and_binary\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 531--533 []\T1/txtt/m/n/10 make_config_from_poi_and_schema() \T1/qtm/m/n/10 (\T1/qtm/m/i t/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 533--534 []\T1/txtt/m/n/10 MALE \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migra tion.Migration at- Underfull \hbox (badness 10000) in paragraph at lines 537--538 []\T1/txtt/m/n/10 metadata \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather.wea ther.Weather prop- Overfull \hbox (8.4223pt too wide) in paragraph at lines 539--541 []\T1/txtt/m/n/10 MigrationType \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migrat ion.migration.Migration Overfull \hbox (49.87175pt too wide) in paragraph at lines 548--549 []| \T1/txtt/m/n/10 emod_api.config.default_from_schema_no_validation\T1/qtm/m/ n/10 , Overfull 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emod_api.serialization.SerializedPopulation\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 598--600 []\T1/txtt/m/n/10 MortalityRateByAge() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Overfull \hbox (15.1475pt too wide) in paragraph at lines 598--600 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 600--602 []\T1/txtt/m/n/10 MortalityStructureNigeriaDHS() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 600--602 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 602--604 []\T1/txtt/m/n/10 MultiInterventionDistributor() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 607--609 []\T1/txtt/m/n/10 new_intervention() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 607--609 \T1/qtm/m/it/10 emod_api.interventions.import_pressure\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 609--611 []\T1/txtt/m/n/10 new_intervention() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 609--611 \T1/qtm/m/it/10 emod_api.interventions.node_multiplier\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 611--613 []\T1/txtt/m/n/10 new_intervention() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 613--615 []\T1/txtt/m/n/10 new_intervention() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 613--615 \T1/qtm/m/it/10 emod_api.interventions.simple_vaccine\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 615--617 []\T1/txtt/m/n/10 new_intervention2() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 615--617 \T1/qtm/m/it/10 emod_api.interventions.simple_vaccine\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 617--619 []\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 617--619 \T1/qtm/m/it/10 emod_api.interventions.import_pressure\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 619--621 []\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 619--621 \T1/qtm/m/it/10 emod_api.interventions.node_multiplier\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 621--623 []\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 623--625 []\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 623--625 \T1/qtm/m/it/10 emod_api.interventions.simple_vaccine\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 625--627 []\T1/txtt/m/n/10 new_scheduled_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 625--627 \T1/qtm/m/it/10 emod_api.interventions.node_multiplier\T1/qtm/m/n/10 ), Overfull \hbox (47.63237pt too wide) in paragraph at lines 629--631 []\T1/txtt/m/n/10 node_count \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demograph ics.Demographics.Demographics Overfull \hbox (13.2223pt too wide) in paragraph at lines 631--633 []\T1/txtt/m/n/10 node_count \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatialre ports.spatial.SpatialReport Underfull \hbox (badness 10000) in paragraph at lines 636--638 []\T1/txtt/m/n/10 node_ID_from_lat_long() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule Overfull \hbox (46.2575pt too wide) in paragraph at lines 636--638 \T1/qtm/m/it/10 emod_api.demographics.DemographicsInputDataParsers\T1/qtm/m/n/1 0 ), [67] Overfull \hbox (37.1324pt too wide) in paragraph at lines 638--640 []\T1/txtt/m/n/10 node_ids \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographic s.Demographics.Demographics Overfull \hbox (2.72234pt too wide) in paragraph at lines 640--642 []\T1/txtt/m/n/10 node_ids \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatialrepo rts.spatial.SpatialReport Underfull \hbox (badness 6808) in paragraph at lines 642--643 []\T1/txtt/m/n/10 node_ids \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather.wea ther.Metadata prop- Underfull \hbox (badness 10000) in paragraph at lines 643--644 []\T1/txtt/m/n/10 node_ids \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather.wea ther.Weather prop- Underfull \hbox (badness 10000) in paragraph at lines 644--646 []\T1/txtt/m/n/10 NodeAttributes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (14.13748pt too wide) in paragraph at lines 644--646 \T1/qtm/m/it/10 emod_api.demographics.PropertiesAndAttributes\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 647--649 []\T1/txtt/m/n/10 NodeCount \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration. migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 649--651 []\T1/txtt/m/n/10 nodeid_from_lat_lon() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Overfull \hbox (21.38245pt too wide) in paragraph at lines 653--655 []\T1/txtt/m/n/10 nodes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.D emographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 656--658 []\T1/txtt/m/n/10 nodes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serialization. dtkFileTools.DtkFile Overfull \hbox (65.82242pt too wide) in paragraph at lines 658--660 []\T1/txtt/m/n/10 nodes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serialization. SerializedPopulation.SerializedPopulation Underfull \hbox (badness 10000) in paragraph at lines 660--662 []\T1/txtt/m/n/10 nodes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatialreports .spatial.SpatialReport Underfull \hbox (badness 10000) in paragraph at lines 664--666 []\T1/txtt/m/n/10 nodes_for_DTK() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 666--668 []\T1/txtt/m/n/10 NoInitialPrevalence() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 666--668 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Overfull \hbox (62.70738pt too wide) in paragraph at lines 668--670 []\T1/txtt/m/n/10 NoRisk() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule emod_api. demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Overfull \hbox (3.48235pt too wide) in paragraph at lines 670--672 []\T1/txtt/m/n/10 NullPtr \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.ser ialization.dtkFileSupport\T1/qtm/m/n/10 ), Overfull \hbox (41.42226pt too wide) in paragraph at lines 672--674 []\T1/txtt/m/n/10 num_channels \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channel reports.channels.ChannelReport Overfull \hbox (10.35226pt too wide) in paragraph at lines 674--676 []\T1/txtt/m/n/10 num_channels \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channel reports.channels.Header Overfull \hbox (51.92223pt too wide) in paragraph at lines 676--678 []\T1/txtt/m/n/10 num_time_steps \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.chann elreports.channels.ChannelReport Overfull \hbox (20.85223pt too wide) in paragraph at lines 678--680 []\T1/txtt/m/n/10 num_time_steps \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.chann elreports.channels.Header Underfull \hbox (badness 10000) in paragraph at lines 683--685 []\T1/txtt/m/n/10 ONE_FOR_EACH_GENDER Underfull \hbox (badness 10000) in paragraph at lines 683--685 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migration.Migration Overfull \hbox (34.6714pt too wide) in paragraph at lines 690--692 []\T1/txtt/m/n/10 PIECEWISE_CONSTANT \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.m igration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 692--694 []\T1/txtt/m/n/10 point_2_grid_cell_id_lookup() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 692--694 \T1/qtm/m/it/10 emod_api.demographics.grid_construction\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 695--697 []\T1/txtt/m/n/10 PropertyValueChanger() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod -ule Underfull \hbox (badness 10000) in paragraph at lines 704--706 []\T1/txtt/m/n/10 recurser() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 704--706 \T1/qtm/m/it/10 emod_api.schema.dtk_post_process_schema\T1/qtm/m/n/10 ), Overfull \hbox (36.17227pt too wide) in paragraph at lines 708--710 []\T1/txtt/m/n/10 report_type \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelr eports.channels.ChannelReport Overfull \hbox (5.10228pt too wide) in paragraph at lines 710--712 []\T1/txtt/m/n/10 report_type \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelr eports.channels.Header Overfull \hbox (51.92223pt too wide) in paragraph at lines 712--714 []\T1/txtt/m/n/10 report_version \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.chann elreports.channels.ChannelReport Overfull \hbox (20.85223pt too wide) in paragraph at lines 714--716 []\T1/txtt/m/n/10 report_version \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.chann elreports.channels.Header Underfull \hbox (badness 10000) in paragraph at lines 716--718 []\T1/txtt/m/n/10 res_in_degrees \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demog raphics.Node.Node Underfull \hbox (badness 10000) in paragraph at lines 723--725 []\T1/txtt/m/n/10 SAME_FOR_BOTH_GENDERS Underfull \hbox (badness 10000) in paragraph at lines 723--725 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 726--728 []\T1/txtt/m/n/10 ScheduledCampaignEvent() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 728--730 []\T1/txtt/m/n/10 schema_to_config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 728--730 \T1/qtm/m/it/10 emod_api.config.from_poi_and_binary\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 730--732 []\T1/txtt/m/n/10 schema_to_config_subnode() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (31.00249pt too wide) in paragraph at lines 730--732 \T1/qtm/m/it/10 emod_api.config.default_from_schema_no_validation\T1/qtm/m/n/10 ), [68] Underfull \hbox (badness 10000) in paragraph at lines 732--734 []\T1/txtt/m/n/10 SchemaConfigBuilder \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 734--736 []\T1/txtt/m/n/10 SchemaConfigBuilder \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 738--740 []\T1/txtt/m/n/10 seed_by_coverage() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 740--742 []\T1/txtt/m/n/10 SerializedPopulation \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 740--742 \T1/qtm/m/it/10 emod_api.serialization.SerializedPopulation\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 742--744 []\T1/txtt/m/n/10 SerialObject \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 744--746 []\T1/txtt/m/n/10 set_beautifiers() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 746--748 []\T1/txtt/m/n/10 set_demog_distributions() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 746--748 \T1/qtm/m/it/10 emod_api.demographics.demographics_utils\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 748--750 []\T1/txtt/m/n/10 set_growing_demographics() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 748--750 \T1/qtm/m/it/10 emod_api.demographics.demographics_utils\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 750--752 []\T1/txtt/m/n/10 set_immune_mod() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 750--752 \T1/qtm/m/it/10 emod_api.demographics.demographics_utils\T1/qtm/m/n/10 ), Overfull \hbox (161.05228pt too wide) in paragraph at lines 752--754 []\T1/txtt/m/n/10 set_resolution() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.dem ographics.DemographicsGenerator.DemographicsGenerator Underfull \hbox (badness 10000) in paragraph at lines 754--756 []\T1/txtt/m/n/10 set_risk_mod() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 754--756 \T1/qtm/m/it/10 emod_api.demographics.demographics_utils\T1/qtm/m/n/10 ), Overfull \hbox (6.99231pt too wide) in paragraph at lines 756--758 []\T1/txtt/m/n/10 set_schema() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.schema_ to_class.ReadOnlyDict Underfull \hbox (badness 10000) in paragraph at lines 759--761 []\T1/txtt/m/n/10 set_schema() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 759--761 \T1/qtm/m/it/10 emod_api.config.from_poi_and_binary\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 761--763 []\T1/txtt/m/n/10 set_static_demographics() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 761--763 \T1/qtm/m/it/10 emod_api.demographics.demographics_utils\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 763--765 []\T1/txtt/m/n/10 SetAgeDistribution() Overfull \hbox (33.46252pt too wide) in paragraph at lines 763--765 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Overfull \hbox (68.63231pt too wide) in paragraph at lines 765--767 []\T1/txtt/m/n/10 SetBirthRate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demog raphics.Demographics.Demographics Overfull \hbox (84.38226pt too wide) in paragraph at lines 767--769 []\T1/txtt/m/n/10 SetConstantRisk() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.de mographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 769--771 []\T1/txtt/m/n/10 SetConstantSusceptibility() Overfull \hbox (33.46252pt too wide) in paragraph at lines 769--771 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 771--773 []\T1/txtt/m/n/10 SetDefaultFromTemplate() Overfull \hbox (33.46252pt too wide) in paragraph at lines 771--773 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 773--775 []\T1/txtt/m/n/10 SetDefaultIndividualAttributes() Overfull \hbox (33.46252pt too wide) in paragraph at lines 773--775 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 775--777 []\T1/txtt/m/n/10 SetDefaultIndividualProperties() Overfull \hbox (33.46252pt too wide) in paragraph at lines 775--777 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 777--779 []\T1/txtt/m/n/10 SetDefaultNodeAttributes() Overfull \hbox (33.46252pt too wide) in paragraph at lines 777--779 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 779--781 []\T1/txtt/m/n/10 SetDefaultProperties() Overfull \hbox (33.46252pt too wide) in paragraph at lines 779--781 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 781--783 []\T1/txtt/m/n/10 SetDefaultPropertiesFertMort() Overfull \hbox (33.46252pt too wide) in paragraph at lines 781--783 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Overfull \hbox (1.12183pt too wide) in paragraph at lines 783--785 []\T1/txtt/m/n/10 SetEquilibriumAgeDistFromBirthAndMortRates() Overfull \hbox (33.46252pt too wide) in paragraph at lines 783--785 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 785--787 []\T1/txtt/m/n/10 SetFertilityOverTimeFromParams() Overfull \hbox (33.46252pt too wide) in paragraph at lines 785--787 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 787--789 []\T1/txtt/m/n/10 SetHeteroRiskExponDist() Overfull \hbox (33.46252pt too wide) in paragraph at lines 787--789 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 789--791 []\T1/txtt/m/n/10 SetHeteroRiskLognormalDist() Overfull \hbox (33.46252pt too wide) in paragraph at lines 789--791 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 791--793 []\T1/txtt/m/n/10 SetHeteroRiskUniformDist() Overfull \hbox (33.46252pt too wide) in paragraph at lines 791--793 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 793--795 []\T1/txtt/m/n/10 SetIndividualAttributesWithFertMort() Overfull \hbox (33.46252pt too wide) in paragraph at lines 793--795 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 795--797 []\T1/txtt/m/n/10 SetInitialAgeExponential() Overfull \hbox (33.46252pt too wide) in paragraph at lines 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2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (./institute-for-disease-modeling-emod-api.out) (./institute-for-disease-modeling-emod-api.out) (/usr/share/texmf/tex/latex/tex-gyre/t1qhv.fd)<><><><> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [2] (./institute-for-disease-modeling-emod-api.toc) [1] [2] [1] [2] Chapter 1. (/usr/share/texmf/tex/latex/tex-gyre/ts1qtm.fd) (/usr/share/texlive/texmf-dist/tex/latex/txfonts/t1txtt.fd) [3] [4] Chapter 2. Underfull \hbox (badness 10000) in paragraph at lines 246--251 []\T1/qtm/m/n/10 Sure. [5] [6] Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 260--263 []\T1/qtm/m/n/10 python -m Underfull \hbox (badness 10000) in paragraph at lines 264--267 []\T1/qtm/m/n/10 python -m [7] [8] Underfull \hbox (badness 10000) in paragraph at lines 529--532 []\T1/qtm/m/n/10 con-fig = json.load(open(^^Pdefault_config.json^^Q), ob-ject_h ook=s2c.ReadOnlyDict) os.remove( ^^Pde- Overfull \hbox (23.04372pt too wide) in paragraph at lines 538--538 []\T1/qtm/m/it/10 path_to_schema\T1/qtm/m/n/10 , Overfull \hbox (37.0137pt too wide) in paragraph at lines 538--538 \T1/qtm/m/it/10 schema_node=True\T1/qtm/m/n/10 , Overfull \hbox (13.74374pt too wide) in paragraph at lines 538--538 \T1/qtm/m/it/10 as_rod=False\T1/qtm/m/n/10 , Overfull \hbox (40.01373pt too wide) in paragraph at lines 538--538 \T1/qtm/m/it/10 put_filename=None\T1/txtt/m/n/10 )| Overfull \hbox (70.57379pt too wide) in paragraph at lines 553--553 \T1/qtm/m/it/10 put_filename=\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 default_config.j son\TS1/qtm/m/it/10 '\T1/qtm/m/n/10 , Overfull \hbox (13.51376pt too wide) in paragraph at lines 553--553 \T1/qtm/m/it/10 schema_node=True\T1/txtt/m/n/10 )| Overfull \hbox (53.72368pt too wide) in paragraph at lines 583--583 []\T1/qtm/m/it/10 config_path=None\T1/qtm/m/n/10 , Overfull \hbox (30.34369pt too wide) in paragraph at lines 583--583 \T1/qtm/m/it/10 set_fn=None\T1/qtm/m/n/10 , Overfull \hbox (19.35367pt too wide) in paragraph at lines 583--583 \T1/qtm/m/it/10 fig=None\T1/txtt/m/n/10 )| Overfull \hbox (36.61365pt too wide) in paragraph at lines 618--618 []\T1/qtm/m/it/10 config_path\T1/qtm/m/n/10 , Overfull \hbox (13.23366pt too wide) in paragraph at lines 618--618 \T1/qtm/m/it/10 set_fn\T1/qtm/m/n/10 , Overfull \hbox (4.76366pt too wide) in paragraph at lines 618--618 \T1/qtm/m/it/10 con- Overfull \hbox (42.7586pt too wide) in paragraph at lines 618--618 \T1/qtm/m/it/10 fig_out_path\T1/txtt/m/n/10 )| [9] [10] Underfull \hbox (badness 10000) in paragraph at lines 811--814 []\T1/qtm/m/n/10 builder = s2c.SchemaConfigBuilder( [11] [12] [13] Overfull \hbox (88.84454pt too wide) in paragraph at lines 1211--1211 \T1/qtm/m/it/10 tional[][][[][]\T1/qtm/m/n/10 emod_api.demographics.PropertiesA ndAttributes.IndividualAttributes.MortalityDistribution[][]\T1/qtm/m/it/10 ] Overfull \hbox (6.90466pt too wide) in paragraph at lines 1267--1267 [][]\T1/qtm/m/n/10 emod_api.demographics.PropertiesAndAttributes.IndividualAttr ibutes.AgeDistribution[][], [14] [15] [16 <./fertility_over_time_doc.png>] (/usr/share/texlive/texmf-dist/tex/latex/txfonts/ts1txtt.fd) Overfull \hbox (377.44386pt too wide) in paragraph at lines 1601--1601 \T1/qtm/m/it/10 tional[][][[][]Union[][][emod_api.dtk_tools.demographics.Demogr aphicsGeneratorConcern.DemographicsGeneratorConcern, Overfull \hbox (349.59387pt too wide) in paragraph at lines 1601--1601 [][]\T1/qtm/m/it/10 List[][][emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern]]] Overfull \hbox (5.45383pt too wide) in paragraph at lines 1601--1601 \T1/qtm/m/it/10 res_in_arcsec=\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 custom\TS1/qtm/ m/it/10 '\T1/qtm/m/n/10 , Overfull \hbox (35.91386pt too wide) in paragraph at lines 1601--1601 \T1/qtm/m/it/10 node_id_from_lat_long=False\T1/txtt/m/n/10 )| [17] Overfull \hbox (309.19406pt too wide) in paragraph at lines 1702--1702 \T1/qtm/m/it/10 tional[][][[][]Union[][][emod_api.dtk_tools.demographics.Demogr aphicsGeneratorConcern.DemographicsGeneratorConcern, Overfull \hbox (281.34407pt too wide) in paragraph at lines 1702--1702 [][]\T1/qtm/m/it/10 List[][][emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern]]] Overfull \hbox (9.76408pt too wide) in paragraph at lines 1702--1702 \T1/qtm/m/it/10 load_other_columns_as_attributes=False\T1/qtm/m/n/10 , [18] Overfull \hbox (282.94414pt too wide) in paragraph at lines 1781--1781 \T1/qtm/m/it/10 tional[][][[][]Union[][][emod_api.dtk_tools.demographics.Demogr aphicsGeneratorConcern.DemographicsGeneratorConcern, Overfull \hbox (255.09415pt too wide) in paragraph at lines 1781--1781 [][]\T1/qtm/m/it/10 List[][][emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern]]] [19] Overfull \hbox (34.91383pt too wide) in paragraph at lines 1869--1869 \T1/qtm/m/it/10 res=0.008333333333333333\T1/txtt/m/n/10 )| Overfull \hbox (13.9139pt too wide) in paragraph at lines 1881--1881 \T1/qtm/m/it/10 res=0.008333333333333333\T1/txtt/m/n/10 )| Overfull \hbox (34.55377pt too wide) in paragraph at lines 1887--1887 \T1/qtm/m/it/10 tra_data_columns=[]\T1/qtm/m/n/10 , Overfull \hbox (66.41374pt too wide) in paragraph at lines 1887--1887 \T1/qtm/m/it/10 res=0.008333333333333333\T1/txtt/m/n/10 )| Underfull \hbox (badness 10000) in paragraph at lines 1933--1936 []\T1/qtm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- [20] Underfull \hbox (badness 10000) in paragraph at lines 1963--1966 []\T1/qtm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 1986--1989 []\T1/qtm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- [21] Overfull \hbox (43.13435pt too wide) in paragraph at lines 2151--2151 \T1/qtm/m/it/10 tional[][][[][]\T1/qtm/m/n/10 emod_api.demographics.PropertiesA ndAttributes.IndividualAttributes[][]\T1/qtm/m/it/10 ] Overfull \hbox (43.93436pt too wide) in paragraph at lines 2151--2151 \T1/qtm/m/it/10 tional[][][[][]\T1/qtm/m/n/10 emod_api.demographics.PropertiesA ndAttributes.IndividualProperties[][]\T1/qtm/m/it/10 ] Overfull \hbox (23.48436pt too wide) in paragraph at lines 2151--2151 \T1/qtm/m/it/10 tional[][][[][]\T1/qtm/m/n/10 emod_api.demographics.PropertiesA ndAttributes.NodeAttributes[][]\T1/qtm/m/it/10 ] [22] Overfull \hbox (221.57382pt too wide) in paragraph at lines 2330--2330 \T1/qtm/m/it/10 tional[][][[][]\T1/qtm/m/n/10 emod_api.demographics.PropertiesA ndAttributes.IndividualProperty[][]\T1/qtm/m/it/10 ] [23] Overfull \hbox (29.17384pt too wide) in paragraph at lines 2363--2363 []\T1/qtm/m/it/10 age_distribution_flag=None\T1/qtm/m/n/10 , Overfull \hbox (14.17384pt too wide) in paragraph at lines 2363--2363 \T1/qtm/m/it/10 age_distribution1=None\T1/qtm/m/n/10 , Overfull \hbox (14.17384pt too wide) in paragraph at lines 2363--2363 \T1/qtm/m/it/10 age_distribution2=None\T1/qtm/m/n/10 , Overfull \hbox (9.17384pt too wide) in paragraph at lines 2363--2363 \T1/qtm/m/it/10 age_distribution=None\T1/qtm/m/n/10 , Overfull \hbox (36.28386pt too wide) in paragraph at lines 2363--2363 \T1/qtm/m/it/10 lence_distribution_flag=None\T1/qtm/m/n/10 , Overfull \hbox (21.28386pt too wide) in paragraph at lines 2363--2363 \T1/qtm/m/it/10 lence_distribution1=None\T1/qtm/m/n/10 , Overfull \hbox (21.28386pt too wide) in paragraph at lines 2363--2363 \T1/qtm/m/it/10 lence_distribution2=None\T1/qtm/m/n/10 , Overfull \hbox (30.18385pt too wide) in paragraph at lines 2363--2363 \T1/qtm/m/it/10 nity_distribution_flag=None\T1/qtm/m/n/10 , Overfull \hbox (15.18385pt too wide) in paragraph at lines 2363--2363 \T1/qtm/m/it/10 nity_distribution1=None\T1/qtm/m/n/10 , Overfull \hbox (15.18385pt too wide) in paragraph at lines 2363--2363 \T1/qtm/m/it/10 nity_distribution2=None\T1/qtm/m/n/10 , Overfull \hbox (30.18385pt too wide) in paragraph at lines 2363--2363 \T1/qtm/m/it/10 risk_distribution_flag=None\T1/qtm/m/n/10 , Overfull \hbox (15.18385pt too wide) in paragraph at lines 2363--2363 \T1/qtm/m/it/10 risk_distribution1=None\T1/qtm/m/n/10 , Overfull \hbox (15.18385pt too wide) in paragraph at lines 2363--2363 \T1/qtm/m/it/10 risk_distribution2=None\T1/qtm/m/n/10 , Overfull \hbox (89.17386pt too wide) in paragraph at lines 2363--2363 \T1/qtm/m/it/10 tion_heterogeneity_distribution_flag=None\T1/qtm/m/n/10 , Overfull \hbox (74.17386pt too wide) in paragraph at lines 2363--2363 \T1/qtm/m/it/10 tion_heterogeneity_distribution1=None\T1/qtm/m/n/10 , Overfull \hbox (74.17386pt too wide) in paragraph at lines 2363--2363 \T1/qtm/m/it/10 tion_heterogeneity_distribution2=None\T1/qtm/m/n/10 , Overfull \hbox (5.18385pt too wide) in paragraph at lines 2363--2363 \T1/qtm/m/it/10 ity_distribution=None\T1/qtm/m/n/10 , Overfull \hbox (5.18385pt too wide) in paragraph at lines 2363--2363 \T1/qtm/m/it/10 ity_distribution=None\T1/qtm/m/n/10 , Overfull \hbox (29.62386pt too wide) in paragraph at lines 2363--2363 \T1/qtm/m/it/10 ity_distribution_male=None\T1/qtm/m/n/10 , Overfull \hbox (36.54384pt too wide) in paragraph at lines 2363--2363 \T1/qtm/m/it/10 ity_distribution_female=None\T1/qtm/m/n/10 , Overfull \hbox (7.93384pt too wide) in paragraph at lines 2363--2363 \T1/qtm/m/it/10 ity_distribution=None\T1/txtt/m/n/10 )| [24] Overfull \hbox (10.98395pt too wide) in paragraph at lines 2462--2462 \T1/qtm/m/it/10 tial_vectors_per_species=None\T1/qtm/m/n/10 , [25] [26] Underfull \hbox (badness 5578) in paragraph at lines 2681--2684 []\T1/qtm/m/n/10 Cre-ate a static de-mo-graph-ics based on the de-mo-graph-ics file spec-i-fied in the con-fig file of the [27] [28] Overfull \hbox (5.21407pt too wide) in paragraph at lines 2911--2911 \T1/qtm/m/it/10 Node_Selection_Type=\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 DISTANCE_ ONLY\TS1/qtm/m/it/10 '\T1/qtm/m/n/10 , [29] [30] Underfull \hbox (badness 10000) in paragraph at lines 3176--3178 []\T1/txtt/bx/n/10 IP. \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 Target_Property_Value. 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Optional broadcast trigger to be [31] [32] [33] Underfull \hbox (badness 10000) in paragraph at lines 3515--3517 []\T1/txtt/bx/n/10 "Delay_Period_Exponential" \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 but without the distribution, which is [34] Overfull \hbox (2.75383pt too wide) in paragraph at lines 3543--3543 \T1/qtm/m/it/10 ip_targeting=None\T1/qtm/m/n/10 , Overfull \hbox (10.51382pt too wide) in paragraph at lines 3543--3543 \T1/qtm/m/it/10 get_age_max=45625\T1/qtm/m/n/10 , Overfull \hbox (29.36382pt too wide) in paragraph at lines 3543--3543 \T1/qtm/m/it/10 get_residents_only=False\T1/qtm/m/n/10 , Overfull \hbox (24.73378pt too wide) in paragraph at lines 3543--3543 \T1/qtm/m/it/10 check_at_trigger=False\T1/txtt/m/n/10 )| Underfull \hbox (badness 10000) in paragraph at lines 3569--3571 []\T1/txtt/bx/n/10 "Delay_Period_Exponential" \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 but without the distribution, which is [35] [36] [37] [38] [39] Underfull \hbox (badness 10000) in paragraph at lines 4055--4060 []\T1/qtm/m/n/10 {^^PDu-ra-tion_Before_Leaving_Distribution^^Q:^^QGAUSSIAN_DIST RIBUTION^^Q, Underfull \hbox (badness 10000) in paragraph at lines 4055--4060 \T1/qtm/m/n/10 ^^PDu-ra-tion_Before_Leaving_Gaussian_Mean^^Q: 14, ^^PDu- Underfull \hbox (badness 10000) in paragraph at lines 4055--4060 \T1/qtm/m/n/10 ra-tion_Before_Leaving_Gaussian_Std_Dev^^Q 3} {^^PDu-ra- Underfull \hbox (badness 10000) in paragraph at lines 4055--4060 \T1/qtm/m/n/10 tion_Before_Leaving_Distribution^^Q:^^QPOISSON_DISTRIBUTION^^Q, ^^PDu-ra- [40] Underfull \hbox (badness 10000) in paragraph at lines 4071--4075 []\T1/qtm/m/n/10 {^^PDu-ra-tion_At_Node_Distribution^^Q:^^QGAUSSIAN_DISTRIBUTIO N^^Q, ^^PDu-ra- Underfull \hbox (badness 10000) in paragraph at lines 4071--4075 \T1/qtm/m/n/10 tion_At_Node_Gaussian_Mean^^Q: 14, ^^PDu-ra-tion_At_Node_Gaussia n_Std_Dev^^Q Underfull \hbox (badness 10000) in paragraph at lines 4071--4075 \T1/qtm/m/n/10 3} {^^PDu-ra-tion_At_Node_Distribution^^Q:^^QPOISSON_DISTRIBUTIO N^^Q, ^^PDu-ra- Overfull \hbox (17.85501pt too wide) in paragraph at lines 4127--4132 \T1/qtm/m/n/10 from emod_api im-port cam-paign as camp dan = {^^PDu-ra-tion_At_ Node_Distribution^^Q:^^QPOISSON_DISTRIBUTION^^Q, Overfull \hbox (55.02502pt too wide) in paragraph at lines 4127--4132 \T1/qtm/m/n/10 ^^PDu-ra-tion_At_Node_Poisson_Mean^^Q 30} dbl = {^^PDu-ra-tion_B efore_Leaving_Distribution^^Q:^^QGAUSSIAN_DISTRIBUTION^^Q, Underfull \hbox (badness 10000) in paragraph at lines 4133--4139 []\T1/qtm/m/n/10 du-ra- ! LaTeX Error: Too deeply nested. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.4162 ...{CONST(ANT)}] \leavevmode\begin{itemize} [41] [42] [43] [44] Underfull \hbox (badness 10000) in paragraph at lines 4550--4554 []\T1/qtm/m/n/10 EMOD/DTK for-mat mi-gra-tion files (and as-so-ci-ated meta-dat a files) can be writ-ten with mi-gra- [45] Overfull \hbox (57.54393pt too wide) in paragraph at lines 4850--4850 [][]\T1/qtm/m/it/10 emod_api.migration.migration.Migration[][]| [46] [47] [48] [49] [50] [51] [52] [53] [54] Underfull \hbox (badness 6842) in paragraph at lines 5974--5977 []\T1/qtm/m/n/10 Set the (path to) the schema file. And re-set all cam-paign va ri-ables. This is es-sen-tially a [55] [56] Chapter 4. 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erialization.dtkFileTools\T1/qtm/m/n/10 ), Overfull \hbox (3.18729pt too wide) in paragraph at lines 188--190 []\T1/txtt/m/n/10 DtkHeader \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.s erialization.dtkFileTools\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 190--192 []\T1/txtt/m/n/10 duplicate_nodeID_check() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Overfull \hbox (46.2575pt too wide) in paragraph at lines 190--192 \T1/qtm/m/it/10 emod_api.demographics.DemographicsInputDataParsers\T1/qtm/m/n/1 0 ), Overfull \hbox (19.2323pt too wide) in paragraph at lines 195--197 []\T1/txtt/m/n/10 EllZeeFour \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api. serialization.dtkFileSupport\T1/qtm/m/n/10 ), Overfull \hbox (27.37175pt too wide) in paragraph at lines 209--210 []\T1/txtt/m/n/10 emod_api.config.default_from_schema_no_validation Overfull \hbox (1.12183pt too wide) in paragraph at lines 211--212 []\T1/txtt/m/n/10 emod_api.config.dtk_post_process_adhocevents 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ration.Migration Underfull \hbox (badness 10000) in paragraph at lines 320--322 []\T1/txtt/m/n/10 FEMALE \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.mig ration.Migration Underfull \hbox (badness 10000) in paragraph at lines 322--324 []\T1/txtt/m/n/10 fill_nodes_legacy() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Overfull \hbox (46.2575pt too wide) in paragraph at lines 322--324 \T1/qtm/m/it/10 emod_api.demographics.DemographicsInputDataParsers\T1/qtm/m/n/1 0 ), Overfull \hbox (31.2124pt too wide) in paragraph at lines 326--328 []\T1/txtt/m/n/10 find() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule emod_api.se rialization.SerializedPopulation\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 328--330 []\T1/txtt/m/n/10 flattenConfig() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (76.32239pt too wide) in paragraph at lines 330--332 []\T1/txtt/m/n/10 flush() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializatio n.SerializedPopulation.SerializedPopulation Underfull \hbox (badness 10000) in paragraph at lines 334--336 []\T1/txtt/m/n/10 from_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 334--336 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 339--341 []\T1/txtt/m/n/10 from_dataframe() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (16.85251pt too wide) in paragraph at lines 339--341 \T1/qtm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 341--343 []\T1/txtt/m/n/10 from_demog_and_param_gravity() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 in mod-ule Overfull \hbox (113.91234pt too wide) in paragraph at lines 345--347 []\T1/txtt/m/n/10 from_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demograp hics.PropertiesAndAttributes.IndividualAttributes Overfull \hbox (180.06232pt too wide) in paragraph at lines 347--349 []\T1/txtt/m/n/10 from_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demograp hics.PropertiesAndAttributes.IndividualAttributes.AgeDistribution Overfull \hbox (197.29231pt too wide) in paragraph at lines 349--351 []\T1/txtt/m/n/10 from_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demograp hics.PropertiesAndAttributes.IndividualAttributes.FertilityDistribution Overfull \hbox (203.09232pt too wide) in paragraph at lines 351--353 []\T1/txtt/m/n/10 from_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demograp hics.PropertiesAndAttributes.IndividualAttributes.MortalityDistribution Overfull \hbox (93.66234pt too wide) in paragraph at lines 353--355 []\T1/txtt/m/n/10 from_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demograp hics.PropertiesAndAttributes.NodeAttributes Underfull \hbox (badness 10000) in paragraph at lines 355--357 []\T1/txtt/m/n/10 from_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather. weather.Metadata Underfull \hbox (badness 10000) in paragraph at lines 357--359 []\T1/txtt/m/n/10 from_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 357--359 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 359--361 []\T1/txtt/m/n/10 from_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (16.85251pt too wide) in paragraph at lines 359--361 \T1/qtm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 361--362 []\T1/txtt/m/n/10 from_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 362--364 []\T1/txtt/m/n/10 from_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 362--364 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 364--365 []\T1/txtt/m/n/10 from_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 365--367 []\T1/txtt/m/n/10 from_pop_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 365--367 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 367--369 []\T1/txtt/m/n/10 from_template_node() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 367--369 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 369--371 []\T1/txtt/m/n/10 FullRisk() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 369--371 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Overfull \hbox (13.67229pt too wide) in paragraph at lines 374--376 []\T1/txtt/m/n/10 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generate_metadata() Overfull \hbox (115.38252pt too wide) in paragraph at lines 384--386 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.DemographicsGenerator.Dem ographicsGenerator Overfull \hbox (161.05228pt too wide) in paragraph at lines 386--388 []\T1/txtt/m/n/10 generate_nodes() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.dem ographics.DemographicsGenerator.DemographicsGenerator Underfull \hbox (badness 10000) in paragraph at lines 390--392 []\T1/txtt/m/n/10 get_bbox() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 390--392 \T1/qtm/m/it/10 emod_api.demographics.grid_construction\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 392--394 []\T1/txtt/m/n/10 get_class_with_defaults() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 394--396 []\T1/txtt/m/n/10 get_colour_from_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule Overfull \hbox (44.89249pt too wide) in paragraph at lines 396--398 \T1/qtm/m/it/10 ule emod_api.config.default_from_schema_no_validation\T1/qtm/m/ n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 398--400 []\T1/txtt/m/n/10 get_default_config_from_schema() \T1/qtm/m/n/10 (\T1/qtm/m/it /10 in mod-ule Overfull \hbox (31.00249pt too wide) in paragraph at lines 398--400 \T1/qtm/m/it/10 emod_api.config.default_from_schema_no_validation\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 400--402 []\T1/txtt/m/n/10 get_default_for_complex_type() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 403--405 []\T1/txtt/m/n/10 get_fert_dist() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 403--405 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 405--407 []\T1/txtt/m/n/10 get_fert_dist_from_rates() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 405--407 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 407--409 []\T1/txtt/m/n/10 get_grid_cell_id() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 407--409 \T1/qtm/m/it/10 emod_api.demographics.grid_construction\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 410--412 []\T1/txtt/m/n/10 get_next_individual_suid() Overfull \hbox (77.9025pt too wide) in paragraph at lines 410--412 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serialization.SerializedPopulation.Ser ializedPopulation Underfull \hbox (badness 10000) in paragraph at lines 412--414 []\T1/txtt/m/n/10 get_next_infection_suid() Overfull \hbox (77.9025pt too wide) in paragraph at lines 412--414 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serialization.SerializedPopulation.Ser ializedPopulation 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422--424 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 424--426 []\T1/txtt/m/n/10 get_parameters() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 424--426 \T1/qtm/m/it/10 emod_api.serialization.SerializedPopulation\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 429--431 []\T1/txtt/m/n/10 get_shape_from_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod -ule Underfull \hbox (badness 10000) in paragraph at lines 432--434 []\T1/txtt/m/n/10 get_waning_from_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 434--436 []\T1/txtt/m/n/10 get_xpix_ypix() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (9.92235pt too wide) in paragraph at lines 441--443 []\T1/txtt/m/n/10 header \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelreport s.channels.ChannelReport Underfull \hbox (badness 10000) in paragraph at lines 443--445 []\T1/txtt/m/n/10 header \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serialization .dtkFileTools.DtkFile Underfull \hbox (badness 5985) in paragraph at lines 452--454 []\T1/txtt/m/n/10 id \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatialreports.sp atial.SpatialNode prop- Underfull \hbox (badness 10000) in paragraph at lines 455--457 []\T1/txtt/m/n/10 id_reference \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather .weather.Metadata Underfull \hbox (badness 10000) in paragraph at lines 457--459 []\T1/txtt/m/n/10 id_reference \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather .weather.Weather Overfull \hbox (34.6714pt too wide) in paragraph at lines 459--461 []\T1/txtt/m/n/10 IDREF_GRUMP1DEGREE \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.m igration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 461--463 []\T1/txtt/m/n/10 IDREF_GRUMP2PT5ARCMIN Underfull \hbox (badness 10000) in paragraph at lines 461--463 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 463--465 []\T1/txtt/m/n/10 IDREF_GRUMP30ARCSEC Underfull \hbox (badness 10000) in paragraph at lines 463--465 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migration.Migration Overfull \hbox (3.1715pt too wide) in paragraph at lines 465--467 []\T1/txtt/m/n/10 IDREF_LEGACY \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migrati on.migration.Migration [65] Underfull \hbox (badness 10000) in paragraph at lines 469--471 []\T1/txtt/m/n/10 IndividualAttributes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (14.13748pt too wide) in paragraph at lines 469--471 \T1/qtm/m/it/10 emod_api.demographics.PropertiesAndAttributes\T1/qtm/m/n/10 ), Overfull \hbox (14.13748pt too wide) in paragraph at lines 471--473 \T1/qtm/m/it/10 emod_api.demographics.PropertiesAndAttributes\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 473--475 []\T1/txtt/m/n/10 IndividualAttributes.FertilityDistribution Overfull \hbox (48.58748pt too wide) in paragraph at lines 473--475 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.demographics.PropertiesAndAtt ributes\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 475--477 []\T1/txtt/m/n/10 IndividualAttributes.MortalityDistribution Overfull \hbox (48.58748pt too wide) in paragraph at lines 475--477 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.demographics.PropertiesAndAtt ributes\T1/qtm/m/n/10 ), Overfull \hbox (16.87178pt too wide) in paragraph at lines 477--479 []\T1/txtt/m/n/10 IndividualAttributes.SusceptibilityDistribution Overfull \hbox (48.58748pt too wide) in paragraph at lines 477--479 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.demographics.PropertiesAndAtt ributes\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 479--481 []\T1/txtt/m/n/10 IndividualProperties \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (14.13748pt too wide) in paragraph at lines 479--481 \T1/qtm/m/it/10 emod_api.demographics.PropertiesAndAttributes\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 481--483 []\T1/txtt/m/n/10 IndividualProperty \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (14.13748pt too wide) in paragraph at lines 481--483 \T1/qtm/m/it/10 emod_api.demographics.PropertiesAndAttributes\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 483--485 []\T1/txtt/m/n/10 infer_natural_mortality() Overfull \hbox (33.46252pt too wide) in paragraph at lines 483--485 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 485--487 []\T1/txtt/m/n/10 init_resolution_from_file() Underfull \hbox (badness 10000) in paragraph at lines 485--487 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Node.Node class Underfull \hbox (badness 10000) in paragraph at lines 487--489 []\T1/txtt/m/n/10 InitAgeUniform() 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emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 495--497 []\T1/txtt/m/n/10 InitRiskUniform() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 495--497 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 497--499 []\T1/txtt/m/n/10 InitSusceptConstant() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 497--499 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Overfull \hbox (29.42224pt too wide) in paragraph at lines 499--501 []\T1/txtt/m/n/10 InterpolationType \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.mi gration.migration.Migration Overfull \hbox (2.72234pt too wide) in paragraph at lines 501--503 []\T1/txtt/m/n/10 interval \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatialrepo rts.spatial.SpatialReport Overfull \hbox (3.1715pt too wide) in paragraph at lines 503--505 []\T1/txtt/m/n/10 INTERVENTION \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migrati on.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 510--512 []\T1/txtt/m/n/10 lat_lon_from_nodeid() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 513--515 []\T1/txtt/m/n/10 LINEAR_INTERPOLATION Underfull \hbox (badness 10000) in paragraph at lines 513--515 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 515--517 []\T1/txtt/m/n/10 load_default_config_as_rod() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (31.00249pt too wide) in paragraph at lines 515--517 \T1/qtm/m/it/10 emod_api.config.default_from_schema_no_validation\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 517--519 []\T1/txtt/m/n/10 LOCAL \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migr ation.Migration at- Underfull \hbox (badness 10000) in paragraph at lines 520--522 []\T1/txtt/m/n/10 lon_lat_2_point() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 520--522 \T1/qtm/m/it/10 emod_api.demographics.grid_construction\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 525--527 []\T1/txtt/m/n/10 make_config_from_poi() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod -ule Underfull \hbox (badness 10000) in paragraph at lines 525--527 \T1/qtm/m/it/10 emod_api.config.from_poi_and_binary\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 527--529 []\T1/txtt/m/n/10 make_config_from_poi_and_config_dict() \T1/qtm/m/n/10 (\T1/qt m/m/it/10 in Overfull \hbox (3.8775pt too wide) in paragraph at lines 527--529 \T1/qtm/m/it/10 mod-ule emod_api.config.from_poi_and_binary\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 529--531 []\T1/txtt/m/n/10 make_config_from_poi_and_config_file() \T1/qtm/m/n/10 (\T1/qt m/m/it/10 in Overfull \hbox (3.8775pt too wide) in paragraph at lines 529--531 \T1/qtm/m/it/10 mod-ule emod_api.config.from_poi_and_binary\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 531--533 []\T1/txtt/m/n/10 make_config_from_poi_and_schema() \T1/qtm/m/n/10 (\T1/qtm/m/i t/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 533--534 []\T1/txtt/m/n/10 MALE \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migra tion.Migration at- Underfull \hbox (badness 10000) in paragraph at lines 537--538 []\T1/txtt/m/n/10 metadata \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather.wea ther.Weather prop- Overfull \hbox (8.4223pt too wide) in paragraph at lines 539--541 []\T1/txtt/m/n/10 MigrationType \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migrat ion.migration.Migration Overfull \hbox (49.87175pt too wide) in paragraph at lines 548--549 []| \T1/txtt/m/n/10 emod_api.config.default_from_schema_no_validation\T1/qtm/m/ n/10 , Overfull \hbox (23.62183pt too wide) in paragraph at lines 549--550 []| \T1/txtt/m/n/10 emod_api.config.dtk_post_process_adhocevents\T1/qtm/m/n/10 , Overfull \hbox (18.37184pt too wide) in paragraph at lines 550--551 []| \T1/txtt/m/n/10 emod_api.config.dtk_pre_process_adhocevents\T1/qtm/m/n/10 , [66] Overfull \hbox (2.62189pt too wide) in paragraph at lines 559--560 []| \T1/txtt/m/n/10 emod_api.demographics.demographics_utils\T1/qtm/m/n/10 , Overfull \hbox (18.37184pt too wide) in paragraph at lines 560--561 []| \T1/txtt/m/n/10 emod_api.demographics.DemographicsGenerator\T1/qtm/m/n/10 , Overfull \hbox (55.12173pt too wide) in paragraph at lines 561--562 []| \T1/txtt/m/n/10 emod_api.demographics.DemographicsInputDataParsers\T1/qtm/m /n/10 , Overfull \hbox (18.37184pt too wide) in paragraph at lines 562--563 []| \T1/txtt/m/n/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 563--564 []| \T1/txtt/m/n/10 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emod_api.serialization.SerializedPopulation\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 598--600 []\T1/txtt/m/n/10 MortalityRateByAge() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Overfull \hbox (15.1475pt too wide) in paragraph at lines 598--600 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 600--602 []\T1/txtt/m/n/10 MortalityStructureNigeriaDHS() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 600--602 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 602--604 []\T1/txtt/m/n/10 MultiInterventionDistributor() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 607--609 []\T1/txtt/m/n/10 new_intervention() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 607--609 \T1/qtm/m/it/10 emod_api.interventions.import_pressure\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 609--611 []\T1/txtt/m/n/10 new_intervention() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 609--611 \T1/qtm/m/it/10 emod_api.interventions.node_multiplier\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 611--613 []\T1/txtt/m/n/10 new_intervention() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 613--615 []\T1/txtt/m/n/10 new_intervention() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 613--615 \T1/qtm/m/it/10 emod_api.interventions.simple_vaccine\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 615--617 []\T1/txtt/m/n/10 new_intervention2() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 615--617 \T1/qtm/m/it/10 emod_api.interventions.simple_vaccine\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 617--619 []\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 617--619 \T1/qtm/m/it/10 emod_api.interventions.import_pressure\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 619--621 []\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 619--621 \T1/qtm/m/it/10 emod_api.interventions.node_multiplier\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 621--623 []\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 623--625 []\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 623--625 \T1/qtm/m/it/10 emod_api.interventions.simple_vaccine\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 625--627 []\T1/txtt/m/n/10 new_scheduled_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 625--627 \T1/qtm/m/it/10 emod_api.interventions.node_multiplier\T1/qtm/m/n/10 ), Overfull \hbox (47.63237pt too wide) in paragraph at lines 629--631 []\T1/txtt/m/n/10 node_count \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demograph ics.Demographics.Demographics Overfull \hbox (13.2223pt too wide) in paragraph at lines 631--633 []\T1/txtt/m/n/10 node_count \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatialre ports.spatial.SpatialReport Underfull \hbox (badness 10000) in paragraph at lines 636--638 []\T1/txtt/m/n/10 node_ID_from_lat_long() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule Overfull \hbox (46.2575pt too wide) in paragraph at lines 636--638 \T1/qtm/m/it/10 emod_api.demographics.DemographicsInputDataParsers\T1/qtm/m/n/1 0 ), [67] Overfull \hbox (37.1324pt too wide) in paragraph at lines 638--640 []\T1/txtt/m/n/10 node_ids \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographic s.Demographics.Demographics Overfull \hbox (2.72234pt too wide) in paragraph at lines 640--642 []\T1/txtt/m/n/10 node_ids \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatialrepo rts.spatial.SpatialReport Underfull \hbox (badness 6808) in paragraph at lines 642--643 []\T1/txtt/m/n/10 node_ids \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather.wea ther.Metadata prop- Underfull \hbox (badness 10000) in paragraph at lines 643--644 []\T1/txtt/m/n/10 node_ids \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather.wea ther.Weather prop- Underfull \hbox (badness 10000) in paragraph at lines 644--646 []\T1/txtt/m/n/10 NodeAttributes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (14.13748pt too wide) in paragraph at lines 644--646 \T1/qtm/m/it/10 emod_api.demographics.PropertiesAndAttributes\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 647--649 []\T1/txtt/m/n/10 NodeCount \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration. migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 649--651 []\T1/txtt/m/n/10 nodeid_from_lat_lon() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Overfull \hbox (21.38245pt too wide) in paragraph at lines 653--655 []\T1/txtt/m/n/10 nodes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.D emographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 656--658 []\T1/txtt/m/n/10 nodes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serialization. dtkFileTools.DtkFile Overfull \hbox (65.82242pt too wide) in paragraph at lines 658--660 []\T1/txtt/m/n/10 nodes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serialization. SerializedPopulation.SerializedPopulation Underfull \hbox (badness 10000) in paragraph at lines 660--662 []\T1/txtt/m/n/10 nodes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatialreports .spatial.SpatialReport Underfull \hbox (badness 10000) in paragraph at lines 664--666 []\T1/txtt/m/n/10 nodes_for_DTK() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 666--668 []\T1/txtt/m/n/10 NoInitialPrevalence() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 666--668 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Overfull \hbox (62.70738pt too wide) in paragraph at lines 668--670 []\T1/txtt/m/n/10 NoRisk() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule emod_api. demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Overfull \hbox (3.48235pt too wide) in paragraph at lines 670--672 []\T1/txtt/m/n/10 NullPtr \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.ser ialization.dtkFileSupport\T1/qtm/m/n/10 ), Overfull \hbox (41.42226pt too wide) in paragraph at lines 672--674 []\T1/txtt/m/n/10 num_channels \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channel reports.channels.ChannelReport Overfull \hbox (10.35226pt too wide) in paragraph at lines 674--676 []\T1/txtt/m/n/10 num_channels \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channel reports.channels.Header Overfull \hbox (51.92223pt too wide) in paragraph at lines 676--678 []\T1/txtt/m/n/10 num_time_steps \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.chann elreports.channels.ChannelReport Overfull \hbox (20.85223pt too wide) in paragraph at lines 678--680 []\T1/txtt/m/n/10 num_time_steps \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.chann elreports.channels.Header Underfull \hbox (badness 10000) in paragraph at lines 683--685 []\T1/txtt/m/n/10 ONE_FOR_EACH_GENDER Underfull \hbox (badness 10000) in paragraph at lines 683--685 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migration.Migration Overfull \hbox (34.6714pt too wide) in paragraph at lines 690--692 []\T1/txtt/m/n/10 PIECEWISE_CONSTANT \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.m igration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 692--694 []\T1/txtt/m/n/10 point_2_grid_cell_id_lookup() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 692--694 \T1/qtm/m/it/10 emod_api.demographics.grid_construction\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 695--697 []\T1/txtt/m/n/10 PropertyValueChanger() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod -ule Underfull \hbox (badness 10000) in paragraph at lines 704--706 []\T1/txtt/m/n/10 recurser() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 704--706 \T1/qtm/m/it/10 emod_api.schema.dtk_post_process_schema\T1/qtm/m/n/10 ), Overfull \hbox (36.17227pt too wide) in paragraph at lines 708--710 []\T1/txtt/m/n/10 report_type \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelr eports.channels.ChannelReport Overfull \hbox (5.10228pt too wide) in paragraph at lines 710--712 []\T1/txtt/m/n/10 report_type \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelr eports.channels.Header Overfull \hbox (51.92223pt too wide) in paragraph at lines 712--714 []\T1/txtt/m/n/10 report_version \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.chann elreports.channels.ChannelReport Overfull \hbox (20.85223pt too wide) in paragraph at lines 714--716 []\T1/txtt/m/n/10 report_version \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.chann elreports.channels.Header Underfull \hbox (badness 10000) in paragraph at lines 716--718 []\T1/txtt/m/n/10 res_in_degrees \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demog raphics.Node.Node Underfull \hbox (badness 10000) in paragraph at lines 723--725 []\T1/txtt/m/n/10 SAME_FOR_BOTH_GENDERS Underfull \hbox (badness 10000) in paragraph at lines 723--725 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 726--728 []\T1/txtt/m/n/10 ScheduledCampaignEvent() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 728--730 []\T1/txtt/m/n/10 schema_to_config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 728--730 \T1/qtm/m/it/10 emod_api.config.from_poi_and_binary\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 730--732 []\T1/txtt/m/n/10 schema_to_config_subnode() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (31.00249pt too wide) in paragraph at lines 730--732 \T1/qtm/m/it/10 emod_api.config.default_from_schema_no_validation\T1/qtm/m/n/10 ), [68] Underfull \hbox (badness 10000) in paragraph at lines 732--734 []\T1/txtt/m/n/10 SchemaConfigBuilder \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 734--736 []\T1/txtt/m/n/10 SchemaConfigBuilder \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 738--740 []\T1/txtt/m/n/10 seed_by_coverage() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 740--742 []\T1/txtt/m/n/10 SerializedPopulation \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 740--742 \T1/qtm/m/it/10 emod_api.serialization.SerializedPopulation\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 742--744 []\T1/txtt/m/n/10 SerialObject \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 744--746 []\T1/txtt/m/n/10 set_beautifiers() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 746--748 []\T1/txtt/m/n/10 set_demog_distributions() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 746--748 \T1/qtm/m/it/10 emod_api.demographics.demographics_utils\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 748--750 []\T1/txtt/m/n/10 set_growing_demographics() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 748--750 \T1/qtm/m/it/10 emod_api.demographics.demographics_utils\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 750--752 []\T1/txtt/m/n/10 set_immune_mod() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 750--752 \T1/qtm/m/it/10 emod_api.demographics.demographics_utils\T1/qtm/m/n/10 ), Overfull \hbox (161.05228pt too wide) in paragraph at lines 752--754 []\T1/txtt/m/n/10 set_resolution() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.dem ographics.DemographicsGenerator.DemographicsGenerator Underfull \hbox (badness 10000) in paragraph at lines 754--756 []\T1/txtt/m/n/10 set_risk_mod() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 754--756 \T1/qtm/m/it/10 emod_api.demographics.demographics_utils\T1/qtm/m/n/10 ), Overfull \hbox (6.99231pt too wide) in paragraph at lines 756--758 []\T1/txtt/m/n/10 set_schema() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.schema_ to_class.ReadOnlyDict Underfull \hbox (badness 10000) in paragraph at lines 759--761 []\T1/txtt/m/n/10 set_schema() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 759--761 \T1/qtm/m/it/10 emod_api.config.from_poi_and_binary\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 761--763 []\T1/txtt/m/n/10 set_static_demographics() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 761--763 \T1/qtm/m/it/10 emod_api.demographics.demographics_utils\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 763--765 []\T1/txtt/m/n/10 SetAgeDistribution() Overfull \hbox (33.46252pt too wide) in paragraph at lines 763--765 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Overfull \hbox (68.63231pt too wide) in paragraph at lines 765--767 []\T1/txtt/m/n/10 SetBirthRate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demog raphics.Demographics.Demographics Overfull \hbox (84.38226pt too wide) in paragraph at lines 767--769 []\T1/txtt/m/n/10 SetConstantRisk() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.de mographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 769--771 []\T1/txtt/m/n/10 SetConstantSusceptibility() Overfull \hbox (33.46252pt too wide) in paragraph at lines 769--771 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 771--773 []\T1/txtt/m/n/10 SetDefaultFromTemplate() Overfull \hbox (33.46252pt too wide) in paragraph at lines 771--773 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 773--775 []\T1/txtt/m/n/10 SetDefaultIndividualAttributes() Overfull \hbox (33.46252pt too wide) in paragraph at lines 773--775 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 775--777 []\T1/txtt/m/n/10 SetDefaultIndividualProperties() Overfull \hbox (33.46252pt too wide) in paragraph at lines 775--777 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 777--779 []\T1/txtt/m/n/10 SetDefaultNodeAttributes() Overfull \hbox (33.46252pt too wide) in paragraph at lines 777--779 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 779--781 []\T1/txtt/m/n/10 SetDefaultProperties() Overfull \hbox (33.46252pt too wide) in paragraph at lines 779--781 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 781--783 []\T1/txtt/m/n/10 SetDefaultPropertiesFertMort() Overfull \hbox (33.46252pt too wide) in paragraph at lines 781--783 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Overfull \hbox (1.12183pt too wide) in paragraph at lines 783--785 []\T1/txtt/m/n/10 SetEquilibriumAgeDistFromBirthAndMortRates() Overfull \hbox (33.46252pt too wide) in paragraph at lines 783--785 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 785--787 []\T1/txtt/m/n/10 SetFertilityOverTimeFromParams() Overfull \hbox (33.46252pt too wide) in paragraph at lines 785--787 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 787--789 []\T1/txtt/m/n/10 SetHeteroRiskExponDist() Overfull \hbox (33.46252pt too wide) in paragraph at lines 787--789 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 789--791 []\T1/txtt/m/n/10 SetHeteroRiskLognormalDist() Overfull \hbox (33.46252pt too wide) in paragraph at lines 789--791 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 791--793 []\T1/txtt/m/n/10 SetHeteroRiskUniformDist() Overfull \hbox (33.46252pt too wide) in paragraph at lines 791--793 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 793--795 []\T1/txtt/m/n/10 SetIndividualAttributesWithFertMort() Overfull \hbox (33.46252pt too wide) in paragraph at lines 793--795 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 795--797 []\T1/txtt/m/n/10 SetInitialAgeExponential() Overfull \hbox (33.46252pt too wide) in paragraph at lines 795--797 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 797--799 []\T1/txtt/m/n/10 SetInitialAgeLikeSubSaharanAfrica() Overfull \hbox (33.46252pt too wide) in paragraph at lines 797--799 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 799--801 []\T1/txtt/m/n/10 SetInitPrevFromUniformDraw() Overfull \hbox (33.46252pt too wide) in paragraph at lines 799--801 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 801--803 []\T1/txtt/m/n/10 SetMigrationPattern() Overfull \hbox (33.46252pt too wide) in paragraph at lines 801--803 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 803--805 []\T1/txtt/m/n/10 SetMinimalNodeAttributes() Overfull \hbox (33.46252pt too wide) in paragraph at lines 803--805 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 805--807 []\T1/txtt/m/n/10 SetMortalityDistribution() Overfull \hbox (33.46252pt too wide) in paragraph at lines 805--807 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 807--809 []\T1/txtt/m/n/10 SetMortalityOverTimeFromData() Overfull \hbox (33.46252pt too wide) in paragraph at lines 807--809 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics [69] Overfull \hbox (89.63225pt too wide) in paragraph at lines 809--811 []\T1/txtt/m/n/10 SetMortalityRate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.d emographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 811--813 []\T1/txtt/m/n/10 SetNodeDefaultFromTemplate() Overfull \hbox (33.46252pt too wide) in paragraph at lines 811--813 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 813--815 []\T1/txtt/m/n/10 SetOneWayMigration() Overfull \hbox (33.46252pt too wide) in paragraph at lines 813--815 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 815--817 []\T1/txtt/m/n/10 SetOverdispersion() Overfull \hbox (33.46252pt too wide) in paragraph at lines 815--817 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 817--819 []\T1/txtt/m/n/10 SetRoundTripMigration() Overfull \hbox (33.46252pt too wide) in paragraph at lines 817--819 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Overfull \hbox (15.1475pt too wide) in paragraph at lines 819--821 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Overfull \hbox (14.49228pt too wide) in paragraph at lines 821--823 []\T1/txtt/m/n/10 simulation \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializa tion.dtkFileTools.DtkFileV1 Overfull \hbox (14.49228pt too wide) in paragraph at lines 823--825 []\T1/txtt/m/n/10 simulation \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializa tion.dtkFileTools.DtkFileV2 Overfull \hbox (14.49228pt too wide) in paragraph at lines 825--827 []\T1/txtt/m/n/10 simulation \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializa tion.dtkFileTools.DtkFileV3 Underfull \hbox (badness 10000) in paragraph at lines 829--831 []\T1/txtt/m/n/10 SpatialReport \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 831--833 []\T1/txtt/m/n/10 StandardDiagnostic() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 833--835 []\T1/txtt/m/n/10 start \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatialreports .spatial.SpatialReport Overfull \hbox (30.92229pt too wide) in paragraph at lines 835--837 []\T1/txtt/m/n/10 start_time \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelre ports.channels.ChannelReport Overfull \hbox (85.98161pt too wide) in paragraph at lines 839--841 []\T1/txtt/m/n/10 STATIC \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics. DemographicsGenerator.DemographicsType Overfull \hbox (25.6723pt too wide) in paragraph at lines 841--843 []\T1/txtt/m/n/10 step_size \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelrep orts.channels.ChannelReport Underfull \hbox (badness 10000) in paragraph at lines 845--847 []\T1/txtt/m/n/10 StepFunctionSusceptibility() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 845--847 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Overfull \hbox (30.92229pt too wide) in paragraph at lines 852--854 []\T1/txtt/m/n/10 time_stamp \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelre ports.channels.ChannelReport Overfull \hbox (13.2223pt too wide) in paragraph at lines 856--858 []\T1/txtt/m/n/10 time_steps \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatialre ports.spatial.SpatialReport Underfull \hbox (badness 10000) in paragraph at lines 858--860 []\T1/txtt/m/n/10 title \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelreports .channels.Channel Overfull \hbox (42.38239pt too wide) in paragraph at lines 861--863 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.Demographics.Demographics Overfull \hbox (74.09238pt too wide) in paragraph at lines 863--865 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.Demographics.DemographicsOverlay Underfull \hbox (badness 10000) in paragraph at lines 865--866 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.Node.Node Overfull \hbox (108.27232pt too wide) in paragraph at lines 866--868 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.PreDefinedDistributions.ConstantDistribution Overfull \hbox (103.41237pt too wide) in paragraph at lines 868--870 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.PropertiesAndAttributes.IndividualAttributes Overfull \hbox (169.56235pt too wide) in paragraph at lines 870--872 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.PropertiesAndAttributes.IndividualAttributes.AgeDistribution Overfull \hbox (186.79234pt too wide) in paragraph at lines 872--874 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.PropertiesAndAttributes.IndividualAttributes.FertilityDistribution Overfull \hbox (192.59235pt too wide) in paragraph at lines 874--876 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.PropertiesAndAttributes.IndividualAttributes.MortalityDistribution Overfull \hbox (208.45236pt too wide) in paragraph at lines 876--878 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.PropertiesAndAttributes.IndividualAttributes.SusceptibilityDistribution Overfull \hbox (106.18236pt too wide) in paragraph at lines 878--880 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.PropertiesAndAttributes.IndividualProperties Overfull \hbox (99.51236pt too wide) in paragraph at lines 880--882 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.PropertiesAndAttributes.IndividualProperty Overfull \hbox (83.16237pt too wide) in paragraph at lines 882--884 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.PropertiesAndAttributes.NodeAttributes Overfull \hbox (17.94235pt too wide) in paragraph at lines 884--886 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.Updateable.Updateable Overfull \hbox (74.09238pt too wide) in paragraph at lines 886--888 []\T1/txtt/m/n/10 to_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.Demographics.DemographicsOverlay Underfull \hbox (badness 10000) in paragraph at lines 888--890 []\T1/txtt/m/n/10 to_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration. migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 890--892 []\T1/txtt/m/n/10 to_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.schema_to_ class.ReadOnlyDict Underfull \hbox (badness 10000) in paragraph at lines 892--893 []\T1/txtt/m/n/10 to_tuple() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demograph ics.Node.Node Underfull \hbox (badness 10000) in paragraph at lines 893--894 []\T1/txtt/m/n/10 Tool \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migra tion.Migration prop- Underfull \hbox (badness 10000) in paragraph at lines 896--898 []\T1/txtt/m/n/10 triggered_campaign_delay_event() \T1/qtm/m/n/10 (\T1/qtm/m/it /10 in mod-ule Overfull \hbox (11.6218pt too wide) in paragraph at lines 898--900 []\T1/txtt/m/n/10 triggered_campaign_event_with_optional_delay() Underfull \hbox (badness 10000) in paragraph at lines 900--902 []\T1/txtt/m/n/10 TriggeredCampaignEvent() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Overfull \hbox (40.13228pt too wide) in paragraph at lines 905--907 []\T1/txtt/m/n/10 uncompress() \T1/qtm/m/n/10 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emod_api.demographic s.Updateable.Updateable Overfull \hbox (11.73221pt too wide) in paragraph at lines 919--921 []\T1/txtt/m/n/10 update_resolution \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.we ather.weather.Metadata Overfull \hbox (6.7322pt too wide) in paragraph at lines 921--923 []\T1/txtt/m/n/10 update_resolution \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.we ather.weather.Weather Overfull \hbox (11.43234pt too wide) in paragraph at lines 923--924 []\T1/txtt/m/n/10 Updateable \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api. demographics.Updateable\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 927--929 []\T1/txtt/m/n/10 validate_res_in_arcsec() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Overfull \hbox (16.85251pt too wide) in paragraph at lines 927--929 \T1/qtm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 929--931 []\T1/txtt/m/n/10 version \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializatio n.dtkFileTools.DtkFile Overfull \hbox (76.32239pt too wide) in paragraph at lines 937--939 []\T1/txtt/m/n/10 write() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializatio n.SerializedPopulation.SerializedPopulation Overfull \hbox (2.12732pt too wide) in paragraph at lines 939--940 []\T1/txtt/m/n/10 write() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule emod_api.s erialization.dtkFileTools\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 940--942 []\T1/txtt/m/n/10 write_config_from_default_and_params() \T1/qtm/m/n/10 (\T1/qt m/m/it/10 in Overfull \hbox (62.11249pt too wide) in paragraph at lines 940--942 \T1/qtm/m/it/10 mod-ule emod_api.config.default_from_schema_no_validation\T1/qt m/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 942--944 []\T1/txtt/m/n/10 write_default_from_schema() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 944--946 []\T1/txtt/m/n/10 write_default_from_schema() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 i n mod-ule Overfull \hbox (31.00249pt too wide) in paragraph at lines 944--946 \T1/qtm/m/it/10 emod_api.config.default_from_schema_no_validation\T1/qtm/m/n/10 ), Overfull \hbox (41.42226pt too wide) in paragraph at lines 946--948 []\T1/txtt/m/n/10 write_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channel reports.channels.ChannelReport Overfull \hbox (23.72227pt too wide) in paragraph at lines 948--950 []\T1/txtt/m/n/10 write_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatial reports.spatial.SpatialReport Underfull \hbox (badness 10000) in paragraph at lines 950--952 []\T1/txtt/m/n/10 write_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather .weather.Metadata Underfull \hbox (badness 10000) in paragraph at lines 952--953 []\T1/txtt/m/n/10 write_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather .weather.Weather Underfull \hbox (badness 10000) in paragraph at lines 956--958 []\T1/txtt/m/n/10 xpix_ypix_from_lat_lon() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule [71]) (./institute-for-disease-modeling-emod-api.aux) ) (see the transcript file for additional information){/usr/share/texmf/fonts/enc /dvips/tex-gyre/q-ec.enc}{/usr/share/texmf/fonts/enc/dvips/tex-gyre/q-ts1.enc}< /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb> Output written on institute-for-disease-modeling-emod-api.pdf (75 pages, 431630 bytes). Transcript written on institute-for-disease-modeling-emod-api.log. Latexmk: Index file 'institute-for-disease-modeling-emod-api.idx' was written Latexmk: Log file says output to 'institute-for-disease-modeling-emod-api.pdf' Latexmk: Log file says output to 'institute-for-disease-modeling-emod-api.pdf' Collected error summary (may duplicate other messages): pdflatex: Command for 'pdflatex' gave return code 256 Latexmk: Errors, in force_mode: so I tried finishing targets [rtd-command-info] start-time: 2022-08-02T20:38:23.695261Z, end-time: 2022-08-02T20:38:23.773722Z, duration: 0, exit-code: 0 mv -f /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/checkouts/latest/docs/_build/latex/institute-for-disease-modeling-emod-api.pdf /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/artifacts/latest/sphinx_pdf/institute-for-disease-modeling-emod-api.pdf